5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139865870:139865891:[+] | chr19:1271168:1271190:[+] | nonBSJ supported | CDS |
circRNA 5':CCAAAUCCAGGUCUUCCAG-UCA 3' ||||:|||::||::| || || target 3':UGUUUGGGUUUAGGGGCUCUAGA 5' |
-21.30 | 14 | RIC-seq |
| chrX:139866516:139866571:[+] | chr19:1274553:1274611:[+] | nonBSJ supported | Intron |
circRNA 5':CUUCCA--------ACCAAGCCAUGUCUUCCAGAAAAUCCACGUCUUCCAGAAAAUAUAUGUCU 3' ||||| ||| || | ||:|| |:|:| || ||:|:|:::| target 3':CGAGGUCCGCCCCCUGGGCCG---C-GAGGGCCCUCCGCGA-CGGGACGUGGGUUGUGUGUGGC 5' |
-22.80 | 1 | RIC-seq |
| chrX:139866534:139866575:[+] | chr19:1274562:1274611:[+] | nonBSJ supported | Intron |
circRNA 5':CUUCCAGAAA----AUCCA-CGUCUUCCAGAAAAUAUAUGUCU----UCCA 3' |||||| |:|| || ||:|| ||:|: :||| target 3':CGAGGUCCGCCCCCUGGGCCGC-GAGGGCCCUCCGCG-ACGGGACGUGGGUU 5' |
-22.40 | 16 | RIC-seq |
| chrX:139866615:139866666:[+] | chr19:1274563:1274611:[+] | nonBSJ supported | Intron |
circRNA 5':UCUCCAGGUCU----UCCAGCAUCUCCAGGGCUUCCAGCAUCUGCUCGUCUUCCAA 3' |||||||: :|| || |||| ||| || ||||:| :||| target 3':CGAGGUCCGCCCCCUGGGCCGC-GAGGGCCCUC----CGC-GACGGGACGUGGGU 5' |
-41.40 | 1 | RIC-seq |
| chrX:139866615:139866667:[+] | chr19:1274562:1274611:[+] | nonBSJ supported | Intron |
circRNA 5':UCUCCAGGUCU----UCCAGCAUCUCCAGGGCUUCCAGCAUCUGCUCGUCUUCCAAC 3' |||||||: :|| || |||| ||| || ||||:| :|||| target 3':CGAGGUCCGCCCCCUGGGCCGC-GAGGGCCCUC----CGC-GACGGGACGUGGGUU 5' |
-42.00 | 17 | RIC-seq |