Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866711:139866749:[+]	chr16:30976736:30976766:[+]	nonBSJ supported	CDS	circRNA 5':UGUCUUCCAACAACUACCC----AGUCUUCCAUCAACUGGCUC 3' \|:\|\|\| \|\|\| \|\|\| \|\|:\|: \|\|\|\|\|\| target 3': CGGAACCCUC-UGA-GGGCCCAUCGGG--------GACCGA 5'	-19.30	1	RIC-seq
chrX:139866711:139866777:[+]	chr16:30976706:30976766:[+]	nonBSJ supported	CDS	circRNA 5':UGUCUUCCAACAACUACCC----AGUCUUCCAUCAACUGGCUCAAUA-UCCAUGUCUU--CCAACGUCUCCAGU 3' \|:\|\|\| \|\|\| \|\|\| \|\|:\|: \|\|\|\|\|\|\| \|\|\| \|\|\| \|\| \|\|:\|\|: \|\|: target 3': CGGAACCCUC-UGA-GGGCCCAUCGGG--------GACCGAGGGGCGAGGGACAUCCACGG-UGUAGGAGUU 5'	-37.50	1	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr16:30976706:30976766:[+]	target	-	chr16:30976717-30976718	G>C	LINC-JP	ICGC