Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865641:139865673:[+] chr10:70101591:70101610:[+] nonBSJ supported CDS

circRNA 5':UCCAUCAAAUACAGAUCUUCCAGCUAAUCCAUG 3'


            |||| ||| |:|| ||||


target  3':UGGUAUU------------GGUGGGUUUGGUA 5'

 -13.70 4 RIC-seq
chrX:139865875:139865897:[+] chr10:70101532:70101554:[+] nonBSJ supported CDS

circRNA 5': UCCAGGUCUUCCAGUCAAUCCAC 3'


            ||| |||||||: |||||


target  3':AAGGGUAAGAAGGUUGACUAGGU 5'

 -20.10 1 RIC-seq
chrX:139865985:139866007:[+] chr10:70101558:70101583:[+] nonBSJ supported CDS

circRNA 5':UCCAUGUCUUCCA--GUAACC--UCCC 3'


            ||||:||:|||| |||| |||


target  3':UGGUAUAGGAGGUGACAUUAACAAGG 5'

 -21.40 2 RIC-seq
chrX:139866209:139866243:[+] chr10:70098382:70098401:[+] nonBSJ supported CDS

circRNA 5':UCUUCCAGGAAAUCCGUGUCUUCCAGCAAGUCCAC 3'


            |||||| | :||||| ||||


target  3':UGAAGGUGC------------GGGUCG---AGGUA 5'

 -19.80 1 RIC-seq
chrX:139866341:139866360:[+] chr10:70101571:70101588:[+] nonBSJ supported CDS

circRNA 5':AGGAAAUCCGUGUCUUCCAG 3'


            ||| ||:|:||:||||


target  3': CCUCAUGGUAUAGGAGGU 5'

 -21.40 2 RIC-seq
chrX:139866522:139866539:[+] chr10:70099201:70099220:[+] nonBSJ supported CDS

circRNA 5': ACCA-AGCCAUGUCUUCCA 3'


            |||| |||||||||:|||


target  3':GUGGUAUCGGUACAGGAGGG 5'

 -29.30 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr10:70101532:70101554:[+] target - chr10:70101546-70101547 G>A PACA-CA ICGC