Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866666:139866698:[+] chr6:44415891:44415923:[+] nonBSJ supported 3UTR

circRNA 5':ACAUCUCCACGUCUUCCAGCA--UCUCUGUGUCUU 3'


            || |||||| ||: || :|||


target  3':AGU-GAGGUGGAUCCUACAAGAAAGGAACUUAGA 5'

 -14.70 1 RIC-seq
chrX:139866666:139866703:[+] chr6:44415885:44415923:[+] nonBSJ supported 3UTR

circRNA 5':ACAUCUCCACGUCUUCCAGCA--UCUCUGUGUCUUCCAGC 3'


            || |||||| ||: || :|||: ||:


target  3':AGU-GAGGUGGAUCCUACAAGAAAGGAACUUAGAGUGUUC 5'

 -18.10 3 RIC-seq
chrX:139866666:139866723:[+] chr6:44415856:44415923:[+] nonBSJ supported 3UTR

circRNA 5':ACAUCUCCAC-------G-UC-UUCCAGC-AUCUCUGUGUCU---UCCAGCAUCUUC-AUGUCUUCCAACAA 3'


            || |||||| | || |||| ||||| :||| ||| ||||| |||


target  3':AGU-GAGGUGGAUCCUACAAGAAAGGAACUUAGAGUGUUCCUAUCGGGUA--AGAUUUUACAGUUAG-UGUA 5'

 -24.60 17 RIC-seq
chrX:139866669:139866723:[+] chr6:44415856:44415921:[+] nonBSJ supported 3UTR

circRNA 5':UCUCCAC-------G-UC-UUCCAGC-AUCUCUGUGUCU---UCCAGCAUCUUC-AUGUCUUCCAACAA 3'


            |||||| | || |||| ||||| :||| ||| ||||| |||


target  3':UGAGGUGGAUCCUACAAGAAAGGAACUUAGAGUGUUCCUAUCGGGUA--AGAUUUUACAGUUAG-UGUA 5'

 -23.70 1 RIC-seq
chrX:139866690:139866748:[+] chr6:44415879:44415930:[+] nonBSJ supported 3UTR

circRNA 5':CUGUGUCUUC-CAGCAUCUUC-AUG-UC-UUCCAACAACUACCCAGUCUUCCAUCAACUGGCU 3'


            ||: ||| | ||:|| ||| || |||| |:|||: || |:||


target  3':AACGAU-AAGUGAGGUGGAUCCUACAAGAAAGGAAC--------UUAGAGUGUUCCU-AUCG 5'

 -19.50 14 RIC-seq
chrX:139865653:139865684:[+] chr6:44358012:44358048:[+] nonBSJ supported CDS

circRNA 5':AGAUC--UUCCAGCUAAU----CCA-UGUCUUCCAGAAA 3'


            ||| |:||| || || ||| |||||


target  3':ACUAAAAAGGGUAUAAAGUAAUGGCGAC-GAAAGUCUU 5'

 -13.60 4 RIC-seq
chrX:139865653:139865690:[+] chr6:44358003:44358048:[+] nonBSJ supported CDS

circRNA 5':AGAUC--UUCCAGCUAAU----CCA-UGUCUUCCAGAAAA--AUCUG 3'


            ||| |:||| || || ||| ||||| |||:


target  3':ACUAAAAAGGGUAUAAAGUAAUGGCGAC-GAAAGUCUUAAAGUAGGA 5'

 -15.30 1 RIC-seq
chrX:139865653:139865699:[+] chr6:44358003:44358048:[+] nonBSJ supported CDS

circRNA 5':AGAUC--UUCCAGCUAAU----CCA-UGUCUUCCAGAAAAAUCUGUGUCUUCCA 3'


            ||| |:||| || || ||| ||||| || |||


target  3':ACUAAAAAGGGUAUAAAGUAAUGGCGAC-GAAAGUCUUAA-------AGUAGGA 5'

 -15.90 4 RIC-seq