Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866411:139866449:[+] chr6:44217205:44217246:[+] nonBSJ supported CDS

circRNA 5':CCA-GCCUA--CUUGUGUCUUCCAACAAA--GGUACGUCUUCCA 3'


            || ||| |:||||||| |||| ||||||| |||


target  3':AGUACGGUUACGGACACAGAUGGUUUCAGUCCCAUGCA--AGGA 5'

 -35.40 7 RIC-seq
chrX:139866584:139866635:[+] chr6:44220909:44220961:[+] nonBSJ supported CDS

circRNA 5':ACGUCUUCCAACAAAUCCAU-GUCUUCCUAUAUCUCCAGGU-CUUCCAG--CAUCU 3'


            |||| ||| |||| ||| |||||||||| ||| ||||


target  3': GCAG-AGG-UGUUACCCCACCAGUCCCAACUAGAGGUCCACGAAAAACCGGUAGU 5'

 -34.40 16 RIC-seq
chrX:139866585:139866635:[+] chr6:44220909:44220960:[+] nonBSJ supported CDS

circRNA 5':CGUCUUCCAACAAAUCCAU-GUCUUCCUAUAUCUCCAGGU-CUUCCAG--CAUCU 3'


            ||| ||| |||| ||| |||||||||| ||| ||||


target  3': CAG-AGG-UGUUACCCCACCAGUCCCAACUAGAGGUCCACGAAAAACCGGUAGU 5'

 -31.80 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr6:44217205:44217246:[+] target - chr6:44217245-44217246 G>A BTCA-JP ICGC
chrX:139866584:139866635:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866585:139866635:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC