Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866316:139866347:[+] chr10:28909485:28909501:[+] nonBSJ supported 3UTR

circRNA 5':AGCUU-CCGAAAAAUCCAGGUCUUCCAGGAAAU 3'


            ||| |||| ||||||


target  3':GUGACUGGCU----------------UCCUUUU 5'

 -9.90 20 RIC-seq
chrX:139866472:139866539:[+] chr10:28822236:28822301:[+] nonBSJ supported 5UTR

circRNA 5':AGGUAUGUCUU-CCAACAAA--GGUACGUCUUCCAGAAAAUCCACGUCUUCCAACCAAG-CCAUGUCUUCCA 3'


            ||:| |: ||||| ||: |: || | ||:| |||| | |:|: |||


target  3':CCCGU-CGCCGCGGUUGAUGUGCCGC-CGU--GG-CGCUUGGCCCCCCUCCCCCCGUUCUGCUGCGC-AGGC 5'

 -23.60 45 RIC-seq
chrX:139866485:139866539:[+] chr10:28822236:28822284:[+] nonBSJ supported 5UTR

circRNA 5':AACAAAGGUACGUCUUCCAGAAAAUCCACGUCUUCCAACCAAG-CCAUGUCUUCCA 3'


            ||| ||: |: || | ||:| |||| | |:|: |||


target  3': UGUG-CCGC-CGU--GG-CGCUUGGCCCCCCUCCCCCCGUUCUGCUGCGC-AGGC 5'

 -14.60 1 RIC-seq
chrX:139866485:139866539:[+] chr10:28822236:28822285:[+] nonBSJ supported 5UTR

circRNA 5':AACAAAGGUACGUCUUCCAGAAAAUCCACGUCUUCCAACCAAG-CCAUGUCUUCCA 3'


            ||| ||: |: || | ||:| |||| | |:|: |||


target  3':AUGUG-CCGC-CGU--GG-CGCUUGGCCCCCCUCCCCCCGUUCUGCUGCGC-AGGC 5'

 -15.30 1 RIC-seq
chrX:139866503:139866539:[+] chr10:28822236:28822272:[+] nonBSJ supported 5UTR

circRNA 5':AGAAAAUCCACGUCUUCCAACCAAG-CCAUGUCUUCCA 3'


            | ||:| |||| | |:|: |||


target  3':GCGCUUGGCCCCCCUCCCCCCGUUCUGCUGCGC-AGGC 5'

 -9.60 1 RIC-seq
chrX:139866523:139866539:[+] chr10:28822236:28822252:[+] nonBSJ supported 5UTR

circRNA 5':CCAAG-CCAUGUCUUCCA 3'


            |||| | |:|: |||


target  3':CGUUCUGCUGCGC-AGGC 5'

 -8.90 1 RIC-seq
chrX:139866527:139866547:[+] chr10:28822271:28822292:[+] nonBSJ supported 5UTR

circRNA 5': GCCAUGUCUUCCAGAAAAUCC 3'


            |||| |:|


target  3':GCGGUUGAUGUGCCGCCGUGGC 5'

 -7.10 1 RIC-seq
chrX:139865376:139865391:[+] chr10:28824548:28824564:[+] nonBSJ supported CDS

circRNA 5':ACUCCGG-GUCUUCCAG 3'


            |||||| ||||: ||


target  3':AGAGGCCGCAGAGCGUA 5'

 -19.20 1 RIC-seq
chrX:139865376:139865398:[+] chr10:28824545:28824564:[+] nonBSJ supported CDS

circRNA 5':ACUCCGG-GUCUUCCAGCGACUUC 3'


            |||||| ||||: ||: |||


target  3':AGAGGCCGCAGAG---CGUAGAA 5'

 -19.80 1 RIC-seq
chrX:139865380:139865405:[+] chr10:28824546:28824568:[+] nonBSJ supported CDS

circRNA 5':CGGGUCUUCCAGCGACUUCAAGUCUU 3'


            ||:|| ||| ||| ||: :|||


target  3':UCCUAG-AGGCCGCAGAGCG-UAGA 5'

 -20.40 1 RIC-seq
chrX:139865380:139865406:[+] chr10:28824545:28824568:[+] nonBSJ supported CDS

circRNA 5':CGGGUCUUCCAGCGACUUCAAGUCUUC 3'


            ||:|| ||| ||| ||: :||||


target  3':UCCUAG-AGGCCGCAGAGCG-UAGAA 5'

 -21.30 30 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr10:28824545:28824564:[+] target 987235 chr10:28824551-28824552 C>T DeSanto-Shinawi_syndrome_due_to_WAC_point_mutation|not_provided ClinVar
chr10:28824545:28824568:[+] target 987235 chr10:28824551-28824552 C>T DeSanto-Shinawi_syndrome_due_to_WAC_point_mutation|not_provided ClinVar
chr10:28824546:28824568:[+] target 987235 chr10:28824551-28824552 C>T DeSanto-Shinawi_syndrome_due_to_WAC_point_mutation|not_provided ClinVar
chr10:28824548:28824564:[+] target 987235 chr10:28824551-28824552 C>T DeSanto-Shinawi_syndrome_due_to_WAC_point_mutation|not_provided ClinVar
chrX:139866316:139866347:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC