Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866637:139866678:[+]	chr8:26514828:26514873:[+]	nonBSJ supported	3UTR	circRNA 5': CAGGGCUUC-CAGCAUCUGCUC--GUCU-UCCAACAUCUCCACGUC 3' \|\|: :\| \|\|\|\|\| :\| \|\| \|\|\|\|\| \|\|\| \|: target 3':CGUUGUGUUCAGUCGUUCCUGUCCCCAUCCAGGUUUCCUCGGU-CGA 5'	-17.00	20	RIC-seq
chrX:139865604:139865624:[+]	chr8:26509793:26509814:[+]	nonBSJ supported	CDS	circRNA 5':UCCA-GGAAAUCCAUGUCUUCC 3' \|\| \|\| \|\|\|\|\|\|:\|\|\|\| target 3':CGGCGCCGUGAGGUACGGAAGU 5'	-22.20	35	RIC-seq
chrX:139865608:139865624:[+]	chr8:26509793:26509810:[+]	nonBSJ supported	CDS	circRNA 5': GGAAAUCCAUGUCUUCC 3' \|\| \|\|\|\|\|\|:\|\|\|\| target 3':GCCGUGAGGUACGGAAGU 5'	-21.20	1	RIC-seq
chrX:139865986:139866035:[+]	chr8:26509838:26509873:[+]	nonBSJ supported	CDS	circRNA 5':CCAUGUCUUCCAGUAACCUCCCAGUCUUCCAGAAAAUCCACGUCUUCCCA 3' \|\|\|\| \|\|\| \|\| \|\|\|:\|\|\|\|\| \|\| :\|\|\|\|\|\|\| target 3':UGUAC-----GUCCCAC---GG-CAGGAGGUCCU----GU-UAGAAGGGG 5'	-28.50	1	RIC-seq
chrX:139865991:139866035:[+]	chr8:26509838:26509881:[+]	nonBSJ supported	CDS	circRNA 5':UCUUC-----CA-GUAACCUCCCAGUCUUCCAGAAAAUCCACGUCUUCCCA 3' \|\|\|\| \|\| \|:\| \|\| \|\|\|:\|\|\|\|\| \|\| :\|\|\|\|\|\|\| target 3': GAAGCCACUGUACGUCCCACGG-CAGGAGGUCCU----GU-UAGAAGGGG 5'	-28.60	3	RIC-seq
chrX:139865991:139866035:[+]	chr8:26509838:26509882:[+]	nonBSJ supported	CDS	circRNA 5':UCUUC-----CA-GUAACCUCCCAGUCUUCCAGAAAAUCCACGUCUUCCCA 3' \|\|\|\| \|\| \|:\| \|\| \|\|\|:\|\|\|\|\| \|\| :\|\|\|\|\|\|\| target 3':GGAAGCCACUGUACGUCCCACGG-CAGGAGGUCCU----GU-UAGAAGGGG 5'	-30.00	23	RIC-seq
chrX:139866359:139866392:[+]	chr8:26492294:26492322:[+]	nonBSJ supported	CDS	circRNA 5':AGCAAAUC-CACGUCUUCCAACAAAGCCAUGUCUU 3' \|\|\| \|\|\|\| \|\|\|\| \|\|\| :\| \|: target 3':CCGUGCUAAGUGCCGAAGC------CGGAGCUGGA 5'	-16.20	26	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr8:26492294:26492322:[+]	target	-	chr8:26492318-26492319	G>T	LICA-CN	ICGC