Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865987:139866037:[+] chr1:36383923:36383973:[+] nonBSJ supported CDS

circRNA 5':CAUGUCU---UCCAGUAACCUCCCAGUCUUCCAGAAAAUCCACGUCUUCCCAAC 3'


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target  3':CUACAACCACAGGUGACACCAGGGUC-GACCCUACAAU-GGUG-AGAAGGGUUA 5'

 -35.30 23 RIC-seq
chrX:139865993:139866037:[+] chr1:36383923:36383964:[+] nonBSJ supported CDS

circRNA 5':UUCCAGUAACCUCCCAGUCUUCCAGAAAAUCCACGUCUUCCCAAC 3'


            |||| | |||||| || |||| |||||||||


target  3':CAGGUGACACCAGGGUC-GACCCUACAAU-GGUG-AGAAGGGUUA 5'

 -35.30 1 RIC-seq
chrX:139866003:139866033:[+] chr1:36383928:36383954:[+] nonBSJ supported CDS

circRNA 5':CUCCCAGUCUUCCAGAAAAUCCACGUCUUCC 3'


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target  3':CAGGGUC-GACCCUACAAU-GGUG-AGAAG 5'

 -21.60 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:36383923:36383973:[+] target - chr1:36383967-36383968 C>G BTCA-JP ICGC