Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865757:139865776:[+] chr14:21731262:21731283:[-] nonBSJ supported 5UTR

circRNA 5': CAAUCAGU--GUCUUCCAGAAA 3'


            ||||||| |:| |||||


target  3':AGUUAGUCCUCCGGCC--UCUUUA 5'

 -11.60 2 RIC-seq
chrX:139865796:139865815:[+] chr14:21731262:21731283:[-] nonBSJ supported 5UTR

circRNA 5': CAAUCAGU--GUCUUCCAGAAA 3'


            ||||||| |:| |||||


target  3':AGUUAGUCCUCCGGCC--UCUUUA 5'

 -11.60 2 RIC-seq
chrX:139866280:139866310:[+] chr14:21733486:21733523:[-] nonBSJ supported 5UTR

circRNA 5':GUCUUCCAGAAAAUCCUUGUCUUC----------CCUCAAA 3'


            || ||| || || |||:| || |||


target  3':GAGUUGGUGUU---GGUUCAGGAAACAUGUCCACGGUGUUC 5'

 -14.00 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr14:21733486:21733523:[-] target - chr14:21733512-21733513 A>T RECA-EU ICGC