Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866354:139866376:[+] chr7:107557862:107557891:[+] nonBSJ supported CDS

circRNA 5': CUUCCA----GCAAAUCCACGU--CUUCC 3'


            |||| || ||:||| |: ||||


target  3':AGAAGACUAAACGGUUGGGUUCGUUGAAGU 5'

 -13.30 9 RIC-seq
chrX:139866354:139866409:[+] chr7:107557823:107557891:[+] nonBSJ supported CDS

circRNA 5': CUUCCA----GCAAAUCCACGU--CUUCCAACA------AAGCCAUGUCUUCCAUCAAAUUAAUGUCU 3'


            |||| || ||:||| |: |||| ||: ||: ||: |||| |||


target  3':AGAAGACUAAACGGUUGGGUUCGUUGAAGUCCCACACACAUUUAGUGACUACCGUGUGUUAACAUCAGU 5'

 -15.00 10 RIC-seq
chrX:139866359:139866376:[+] chr7:107557862:107557881:[+] nonBSJ supported CDS

circRNA 5':AGCAAAUCCACGU--CUUCC 3'


            || ||:||| |: ||||


target  3':ACGGUUGGGUUCGUUGAAGU 5'

 -13.00 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr7:107557823:107557891:[+] target 2069354 chr7:107557829-107557830 C>G Pyruvate_dehydrogenase_E3_deficiency ClinVar
chr7:107557823:107557891:[+] target 11969 chr7:107557849-107557850 T>C Pyruvate_dehydrogenase_E3_deficiency ClinVar
chr7:107557823:107557891:[+] target 1726989 chr7:107557851-107557852 TAC>T Pyruvate_dehydrogenase_E3_deficiency ClinVar
chr7:107557823:107557891:[+] target 1070701 chr7:107557853-107557854 C>G Pyruvate_dehydrogenase_E3_deficiency ClinVar
chr7:107557823:107557891:[+] target 2674862 chr7:107557855-107557856 C>CA Pyruvate_dehydrogenase_E3_deficiency ClinVar
chr7:107557823:107557891:[+] target 2674864 chr7:107557885-107557886 C>A Pyruvate_dehydrogenase_E3_deficiency ClinVar
chr7:107557823:107557891:[+] target 2674848 chr7:107557885-107557886 C>G Pyruvate_dehydrogenase_E3_deficiency ClinVar
chr7:107557823:107557891:[+] target 2674855 chr7:107557890-107557891 G>T Pyruvate_dehydrogenase_E3_deficiency ClinVar
chr7:107557862:107557891:[+] target 2674864 chr7:107557885-107557886 C>A Pyruvate_dehydrogenase_E3_deficiency ClinVar
chr7:107557862:107557891:[+] target 2674848 chr7:107557885-107557886 C>G Pyruvate_dehydrogenase_E3_deficiency ClinVar
chr7:107557862:107557891:[+] target 2674855 chr7:107557890-107557891 G>T Pyruvate_dehydrogenase_E3_deficiency ClinVar