Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865874:139865920:[+] chr16:24805910:24805956:[+] nonBSJ supported CDS

circRNA 5':AUCCAGGUCUUCCAGUCAAUCCACAUCUUCC----------GGAAAAAAUCCAGGUC 3'


            |||| :||:|| ||| |||||| || ||||||:


target  3':GAGGUGUAGGAGA------AGG---AGAAGGGUCGGUCACCCCGCUAA-AGGUCCGU 5'

 -31.70 2 RIC-seq
chrX:139866757:139866787:[+] chr16:24800813:24800862:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAACGUC---------------------UCCAGUGUGCUGAUCU 3'


            || || ||||| |||| |||||: ||:


target  3':GAC-GAUGGUUGAUGUUUGAACAAAACCCUUGGUUCAGGU--CACGAUAAGGC 5'

 -18.70 2 RIC-seq
chrX:139866056:139866089:[+] chr16:24835309:24835346:[+] nonBSJ supported Intron

circRNA 5':AAUUUGGGUCUUCCU---GAAAAUCUACGUCUUC-CAA 3'


            ||||||| || ||| | ||| ||


target  3':AUAAACCCUCACAUUUAUCUCAUCUAUGGAAAAGUGUA 5'

 -11.00 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865874:139865920:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC