Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866115:139866144:[+] chr1:22011688:22011744:[-] nonBSJ supported Intron

circRNA 5':ACAUCUUCCAAUGG------------------------CCUCC---AGGUCUUCCAG 3'


            |||||| |||| ||| ||||||| ||


target  3':CGUAGAAAGUUAAAGAAUGUAAUCACAAAACAUCAAAAGGAACAUCUCCAGAAAGUG 5'

 -17.30 1 RIC-seq
chrX:139866115:139866151:[+] chr1:22011688:22011749:[-] nonBSJ supported Intron

circRNA 5':ACAUCUUCCAAUGG------------------------CCUCC---AGGUCUUCCAGACUAUCC 3'


            |||||| |||| ||| ||||||| ||: ||


target  3':CGUAGAAAGUUAAAGAAUGUAAUCACAAAACAUCAAAAGGAACAUCUCCAGAAAG--UGGAAGA 5'

 -18.30 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:22011688:22011744:[-] target - chr1:22011706-22011707 C>T PACA-CA ICGC
chr1:22011688:22011749:[-] target - chr1:22011706-22011707 C>T PACA-CA ICGC