Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866297:139866318:[+] chr1:40026743:40026773:[-] nonBSJ supported 3UTR

circRNA 5':UGUCUUC---CCUCAAA------UCCAUAGC 3'


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target  3':UCAGAAGUUUGGAACUCAACUUAAGGUAUUC 5'

 -13.00 1 RIC-seq
chrX:139866340:139866378:[+] chr1:40026738:40026770:[-] nonBSJ supported 3UTR

circRNA 5':CAGGAAAUCCGUGUCUUCCAGCAAAUCCACGUCUUCCAA 3'


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target  3':AUCCUU------CAGAAGUUUGGAACUCAACUUAAGGUA 5'

 -17.80 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866297:139866318:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC