Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865500:139865513:[+] chr9:94794409:94794421:[-] nonBSJ supported 3UTR

circRNA 5':AGAAGCUCCAAGUC 3'


            |||||||| |||


target  3':ACUUCGAGG-UCAA 5'

 -16.80 2 RIC-seq
chrX:139866629:139866670:[+] chr9:94795749:94795801:[-] nonBSJ supported Intron

circRNA 5':AGCAUC---UCC--AGGGCUU----CCAGCAU--CUGCUCGUCUUCCAACAUC 3'


            |||| ||| ||||| ||||||: || |:||||:|| ||:|


target  3':ACGUACCUCAGGACUCCCGUGUUUUGGUCGUGCCGA-GGGCAGGAGUACGUGGA 5'

 -40.50 2 RIC-seq