Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866526:139866553:[+]	chr9:94830354:94830381:[-]	nonBSJ supported	CDS	circRNA 5':AGCCAUGUCUUCCAGAAAAUCC------ACGUCU 3' \|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|\|:\|\| target 3':CCGC--CAGAAGGU---UUAGGUUUACUUGUAG 5'	-20.60	1	RIC-seq
chrX:139866554:139866589:[+]	chr9:94830351:94830381:[-]	nonBSJ supported	CDS	circRNA 5':UCCAGAAAAUAUAUGUCUUCCAA--CUAAGCU-ACGUCU 3' \|\|\|\| \|\|\|\|\|\|\|\|\| \|:\|\|: \|\|:\|\| target 3': GGUCCGC------CAGAAGGUUUAGGUUUACUUGUAG 5'	-20.30	21	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr9:94830351:94830381:[-]	target	4801	chr9:94830377-94830378	A>T	SPTLC1-related_disorder\|not_provided\|Inborn_genetic_diseases\|Hereditary_sensory_and_autonomic_neuropathy_type_1\|Charcot-Marie-Tooth_disease\|Neuropathy,_hereditary_sensory_and_autonomic,_type_1A	ClinVar
chr9:94830354:94830381:[-]	target	4801	chr9:94830377-94830378	A>T	SPTLC1-related_disorder\|not_provided\|Inborn_genetic_diseases\|Hereditary_sensory_and_autonomic_neuropathy_type_1\|Charcot-Marie-Tooth_disease\|Neuropathy,_hereditary_sensory_and_autonomic,_type_1A	ClinVar
chr9:94830351:94830381:[-]	target	-	chr9:94830357-94830358	G>A	BTCA-JP	ICGC
chr9:94830354:94830381:[-]	target	-	chr9:94830357-94830358	G>A	BTCA-JP	ICGC