Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866126:139866152:[+] chr19:49468629:49468655:[+] nonBSJ supported 5UTR

circRNA 5':UGGCC-UCC-AGGUCUUCCAGACUAUCCA 3'


            ||| || ||| || ||| |||


target  3':CCCGCCAGCCUCC-GACCUUCUCUCAGG 5'

 -12.00 1 RIC-seq
chrX:139866126:139866163:[+] chr19:49468586:49468645:[+] nonBSJ supported 5UTR

circRNA 5':UGGC-----------CUCCAGGUCU------UCCAGACUAUCCAU--GUCUUC--CAGA 3'


            ||| |:|| |:||| ||||:|| |: ||||


target  3':UCCGACCUUCUCUCAGGGGCCUAGACAAGGCAGGUUUGUGACAACUUCGUUCUCUGUCUG 5'

 -20.50 1 RIC-seq
chrX:139866126:139866171:[+] chr19:49468583:49468645:[+] nonBSJ supported 5UTR

circRNA 5':UGGC-----------CUCCAGGUCU------UCCAGACUAUCCAUGUCUUCCAGAAAAUCCUU 3'


            ||| |:|| |:||| ||||:|| ||| ||:


target  3':UCCGACCUUCUCUCAGGGGCCUAGACAAGGCAGGUUUGUGACAACUUCGUUCUCUGUCUGGGC 5'

 -23.80 2 RIC-seq
chrX:139866126:139866174:[+] chr19:49468581:49468645:[+] nonBSJ supported 5UTR

circRNA 5':UGGC-----------CUCCAGGUCU------UCCAGACUAUCCAUGUCUUCCAGAAAAUCCUUGUC 3'


            ||| |:|| |:||| ||||:|| ||| || :|:


target  3':UCCGACCUUCUCUCAGGGGCCUAGACAAGGCAGGUUUGUGACAACUUCGUUCUCUGUCUGG-GCGC 5'

 -23.90 13 RIC-seq
chrX:139866189:139866241:[+] chr19:49469845:49469887:[+] nonBSJ supported CDS

circRNA 5':UAGCUUCCAAAAAAUCCGGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAGUCC 3'


            |||||| ||| :||| ||||| | ||| ||||| |||||


target  3':UUCGAAGUGA----AGGAGUAGA---UCCUUCA--CUCAG-AGGUCCUUCAGU 5'

 -32.50 2 RIC-seq
chrX:139866189:139866244:[+] chr19:49469844:49469887:[+] nonBSJ supported CDS

circRNA 5':UAGCUUCCAAAAAAUCCGGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAGUCCACG 3'


            |||||| ||| :||| ||||| | ||| ||||| |||| |||


target  3':UUCGAAGUGA----AGGAGUAGA---UCCUUCA--CUCAG-AGGUCCUUCA-GUG 5'

 -33.90 19 RIC-seq
chrX:139866630:139866647:[+] chr19:49469622:49469648:[+] nonBSJ supported CDS

circRNA 5': GCAUC-UCCAGGGCU------UCCA 3'


            ||| :||||||| ||||


target  3':CCGUCUUGGGUCCCGUACUUCUAGGUU 5'

 -18.70 1 RIC-seq
chrX:139866630:139866653:[+] chr19:49469623:49469648:[+] nonBSJ supported CDS

circRNA 5': GCAUC-UCCAGGGCUUCCAGCAUCU 3'


            ||| :||||||| || |||:


target  3':CCGUCUUGGGUCCCGUACUUC-UAGGU 5'

 -20.80 1 RIC-seq
chrX:139866630:139866662:[+] chr19:49469613:49469648:[+] nonBSJ supported CDS

circRNA 5': GCAUC-UCCAGGGCUUCCAGCAUCUGCUC--GUCUU 3'


            ||| :||||||| || |||: |:||


target  3':CCGUCUUGGGUCCCGUACUUC-UAGGUUUUCCCGGAC 5'

 -22.90 24 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr19:49468581:49468645:[+] target 16484 chr19:49468586-49468587 GTCTGTC>G Hereditary_hyperferritinemia_with_congenital_cataracts ClinVar
chr19:49468581:49468645:[+] target 487345 chr19:49468587-49468588 T>G not provided ClinVar
chr19:49468581:49468645:[+] target 16476 chr19:49468597-49468598 G>A Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy|not_provided|FTL-related_disorder ClinVar
chr19:49468581:49468645:[+] target 16485 chr19:49468597-49468598 G>C Hereditary_hyperferritinemia_with_congenital_cataracts|FTL-related_disorder|not_provided|Neuroferritinopathy ClinVar
chr19:49468581:49468645:[+] target 16479 chr19:49468597-49468598 G>T Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy|FTL-related_disorder|not_provided ClinVar
chr19:49468581:49468645:[+] target 963917 chr19:49468598-49468599 C>T Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy ClinVar
chr19:49468581:49468645:[+] target 1052512 chr19:49468599-49468600 T>C Neuroferritinopathy|Hereditary_hyperferritinemia_with_congenital_cataracts ClinVar
chr19:49468581:49468645:[+] target 16481 chr19:49468601-49468602 C>A Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy ClinVar
chr19:49468581:49468645:[+] target 96691 chr19:49468601-49468602 C>T Hereditary_hyperferritinemia_with_congenital_cataracts ClinVar
chr19:49468581:49468645:[+] target 1321316 chr19:49468604-49468605 C>G Hereditary_hyperferritinemia_with_congenital_cataracts ClinVar
chr19:49468581:49468645:[+] target 16480 chr19:49468604-49468605 C>T Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy|not_provided|L-ferritin_deficiency ClinVar
chr19:49468581:49468645:[+] target 16474 chr19:49468605-49468606 A>G Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy|not_provided ClinVar
chr19:49468581:49468645:[+] target 16475 chr19:49468606-49468607 G>C Hereditary_hyperferritinemia_with_congenital_cataracts ClinVar
chr19:49468581:49468645:[+] target 647521 chr19:49468608-49468609 G>A Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy ClinVar
chr19:49468581:49468645:[+] target 2138316 chr19:49468612-49468613 G>A Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy ClinVar
chr19:49468581:49468645:[+] target 2197338 chr19:49468614-49468615 A>G Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy ClinVar
chr19:49468581:49468645:[+] target 1686694 chr19:49468615-49468616 C>A Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy|not_provided ClinVar
chr19:49468581:49468645:[+] target 16482 chr19:49468616-49468617 G>C Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy|L-ferritin_deficiency ClinVar
chr19:49468583:49468645:[+] target 16484 chr19:49468586-49468587 GTCTGTC>G Hereditary_hyperferritinemia_with_congenital_cataracts ClinVar
chr19:49468583:49468645:[+] target 487345 chr19:49468587-49468588 T>G not provided ClinVar
chr19:49468583:49468645:[+] target 16476 chr19:49468597-49468598 G>A Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy|not_provided|FTL-related_disorder ClinVar
chr19:49468583:49468645:[+] target 16485 chr19:49468597-49468598 G>C Hereditary_hyperferritinemia_with_congenital_cataracts|FTL-related_disorder|not_provided|Neuroferritinopathy ClinVar
chr19:49468583:49468645:[+] target 16479 chr19:49468597-49468598 G>T Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy|FTL-related_disorder|not_provided ClinVar
chr19:49468583:49468645:[+] target 963917 chr19:49468598-49468599 C>T Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy ClinVar
chr19:49468583:49468645:[+] target 1052512 chr19:49468599-49468600 T>C Neuroferritinopathy|Hereditary_hyperferritinemia_with_congenital_cataracts ClinVar
chr19:49468583:49468645:[+] target 16481 chr19:49468601-49468602 C>A Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy ClinVar
chr19:49468583:49468645:[+] target 96691 chr19:49468601-49468602 C>T Hereditary_hyperferritinemia_with_congenital_cataracts ClinVar
chr19:49468583:49468645:[+] target 1321316 chr19:49468604-49468605 C>G Hereditary_hyperferritinemia_with_congenital_cataracts ClinVar
chr19:49468583:49468645:[+] target 16480 chr19:49468604-49468605 C>T Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy|not_provided|L-ferritin_deficiency ClinVar
chr19:49468583:49468645:[+] target 16474 chr19:49468605-49468606 A>G Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy|not_provided ClinVar
chr19:49468583:49468645:[+] target 16475 chr19:49468606-49468607 G>C Hereditary_hyperferritinemia_with_congenital_cataracts ClinVar
chr19:49468583:49468645:[+] target 647521 chr19:49468608-49468609 G>A Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy ClinVar
chr19:49468583:49468645:[+] target 2138316 chr19:49468612-49468613 G>A Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy ClinVar
chr19:49468583:49468645:[+] target 2197338 chr19:49468614-49468615 A>G Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy ClinVar
chr19:49468583:49468645:[+] target 1686694 chr19:49468615-49468616 C>A Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy|not_provided ClinVar
chr19:49468583:49468645:[+] target 16482 chr19:49468616-49468617 G>C Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy|L-ferritin_deficiency ClinVar
chr19:49468586:49468645:[+] target 16484 chr19:49468586-49468587 GTCTGTC>G Hereditary_hyperferritinemia_with_congenital_cataracts ClinVar
chr19:49468586:49468645:[+] target 487345 chr19:49468587-49468588 T>G not provided ClinVar
chr19:49468586:49468645:[+] target 16476 chr19:49468597-49468598 G>A Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy|not_provided|FTL-related_disorder ClinVar
chr19:49468586:49468645:[+] target 16485 chr19:49468597-49468598 G>C Hereditary_hyperferritinemia_with_congenital_cataracts|FTL-related_disorder|not_provided|Neuroferritinopathy ClinVar
chr19:49468586:49468645:[+] target 16479 chr19:49468597-49468598 G>T Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy|FTL-related_disorder|not_provided ClinVar
chr19:49468586:49468645:[+] target 963917 chr19:49468598-49468599 C>T Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy ClinVar
chr19:49468586:49468645:[+] target 1052512 chr19:49468599-49468600 T>C Neuroferritinopathy|Hereditary_hyperferritinemia_with_congenital_cataracts ClinVar
chr19:49468586:49468645:[+] target 16481 chr19:49468601-49468602 C>A Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy ClinVar
chr19:49468586:49468645:[+] target 96691 chr19:49468601-49468602 C>T Hereditary_hyperferritinemia_with_congenital_cataracts ClinVar
chr19:49468586:49468645:[+] target 1321316 chr19:49468604-49468605 C>G Hereditary_hyperferritinemia_with_congenital_cataracts ClinVar
chr19:49468586:49468645:[+] target 16480 chr19:49468604-49468605 C>T Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy|not_provided|L-ferritin_deficiency ClinVar
chr19:49468586:49468645:[+] target 16474 chr19:49468605-49468606 A>G Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy|not_provided ClinVar
chr19:49468586:49468645:[+] target 16475 chr19:49468606-49468607 G>C Hereditary_hyperferritinemia_with_congenital_cataracts ClinVar
chr19:49468586:49468645:[+] target 647521 chr19:49468608-49468609 G>A Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy ClinVar
chr19:49468586:49468645:[+] target 2138316 chr19:49468612-49468613 G>A Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy ClinVar
chr19:49468586:49468645:[+] target 2197338 chr19:49468614-49468615 A>G Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy ClinVar
chr19:49468586:49468645:[+] target 1686694 chr19:49468615-49468616 C>A Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy|not_provided ClinVar
chr19:49468586:49468645:[+] target 16482 chr19:49468616-49468617 G>C Hereditary_hyperferritinemia_with_congenital_cataracts|Neuroferritinopathy|L-ferritin_deficiency ClinVar
chr19:49469613:49469648:[+] target 3897670 chr19:49469639-49469640 G>TTT Neuroferritinopathy ClinVar
chr19:49469622:49469648:[+] target 3897670 chr19:49469639-49469640 G>TTT Neuroferritinopathy ClinVar
chr19:49469623:49469648:[+] target 3897670 chr19:49469639-49469640 G>TTT Neuroferritinopathy ClinVar
chr19:49469844:49469887:[+] target - chr19:49469872-49469873 T>G PACA-CA ICGC
chr19:49469844:49469887:[+] target - chr19:49469873-49469874 G>T RECA-EU ICGC
chr19:49469845:49469887:[+] target - chr19:49469872-49469873 T>G PACA-CA ICGC
chr19:49469845:49469887:[+] target - chr19:49469873-49469874 G>T RECA-EU ICGC