Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865668:139865702:[+] chr11:95569310:95569338:[-] nonBSJ supported CDS

circRNA 5':UCCAUGUC--UUCCAGAAAAAUCUGUGUCUUCCACCA 3'


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target  3':UGG-ACACCAAAG-------UAGGCACCUAAGGUGGA 5'

 -22.30 10 RIC-seq
chrX:139865685:139865702:[+] chr11:95569321:95569338:[-] nonBSJ supported CDS

circRNA 5':AAUCUGUGUCUUCCACCA 3'


            |||:||| |||||||


target  3':GUAGGCACCUAAGGUGGA 5'

 -21.80 19 RIC-seq
chrX:139865989:139866016:[+] chr11:95581033:95581065:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCA----GUAACCUCCCAGUCUU--CCA 3'


            |||||| :|||||| ||| :||| ||


target  3':GUAGAAGUGAAAGUAUUGGA-GGUGGGAAACGGA 5'

 -22.90 8 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr11:95569310:95569338:[-] target 623390 chr11:95569314-95569315 G>A Charcot-Marie-Tooth_disease_type_4B1 ClinVar
chr11:95569310:95569338:[-] target 637810 chr11:95569333-95569334 C>T Charcot-Marie-Tooth_disease|not_provided ClinVar
chr11:95569310:95569338:[-] target 1779299 chr11:95569335-95569336 AC>A Inborn_genetic_diseases ClinVar
chr11:95569310:95569338:[-] target 993001 chr11:95569337-95569338 CTTATGTAAT>GG Charcot-Marie-Tooth_disease_type_4B1 ClinVar
chr11:95569321:95569338:[-] target 637810 chr11:95569333-95569334 C>T Charcot-Marie-Tooth_disease|not_provided ClinVar
chr11:95569321:95569338:[-] target 1779299 chr11:95569335-95569336 AC>A Inborn_genetic_diseases ClinVar
chr11:95569321:95569338:[-] target 993001 chr11:95569337-95569338 CTTATGTAAT>GG Charcot-Marie-Tooth_disease_type_4B1 ClinVar