5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139865632:139865677:[+] | chr11:89177335:89177403:[-] | nonBSJ supported | CDS |
circRNA 5':UCAAGGUCUUC--------------------------CAUCAAAUACAGAUCUUCCAGCUAAUC-CAUGUCUU 3' |||:|||||| ||| ||||| ||||:| ||:|:|| target 3': GUUUCAGAAGUGACAUUAAGUGACUCUUCAACUCCCGUAAGUG--GUCUACCC-GUCGGUGUACGUGCGGAU 5' |
-29.00 | 2 | RIC-seq |
| chrX:139865633:139865677:[+] | chr11:89177336:89177403:[-] | nonBSJ supported | CDS |
circRNA 5':CAAGGUCUUC--------------------------CAUCAAAUACAGAUCUUCCAGCUAAUC-CAUGUCUU 3' ||:|||||| ||| ||||| ||||:| ||:|:|| target 3': UUUCAGAAGUGACAUUAAGUGACUCUUCAACUCCCGUAAGUG--GUCUACCC-GUCGGUGUACGUGCGGAU 5' |
-26.60 | 41 | RIC-seq |
| chrX:139865633:139865683:[+] | chr11:89177336:89177382:[-] | nonBSJ supported | CDS |
circRNA 5':CAAGGUCUUC-CAUCAAA-UAC--AGAUCUUCCA-GCUAAUCCAUGUCUUCCAGAA 3' ||:|||||| | :|| ||| || || ||||| target 3': UUUCAGAAGUGACAUUAAGUGACUCUUCAACUCCCGUA-------AGU-GGUCUA 5' |
-15.10 | 1 | RIC-seq |
| chrX:139865635:139865677:[+] | chr11:89177368:89177403:[-] | nonBSJ supported | CDS |
circRNA 5':AGGUCUUCCAUCAAAUACAGAUCUUCCAGCUAAUC-CAUGUCUU 3' ||: ||| ||||| ||||:| ||:|:|| target 3':CCCGUAAGUG-------GUCUACCC-GUCGGUGUACGUGCGGAU 5' |
-22.90 | 1 | RIC-seq |
| Interaction region | CircRNA/target | Mutation ID | Position | Variant | Associated trait | Resource |
| chr11:89177335:89177403:[-] | target | - | chr11:89177361-89177362 | A>T | LINC-JP | ICGC |
| chr11:89177336:89177382:[-] | target | - | chr11:89177361-89177362 | A>T | LINC-JP | ICGC |
| chr11:89177336:89177403:[-] | target | - | chr11:89177361-89177362 | A>T | LINC-JP | ICGC |