Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865472:139865499:[+] chr12:124074958:124074984:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCGGACAAUCCAUGUCUUCCA 3'


            | |||:|||||| ||||||| ||||


target  3':AAGAGAGGGCCUGA-AGGUACAUAAGGA 5'

 -34.20 13 RIC-seq
chrX:139865472:139865517:[+] chr12:124074934:124074984:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCGGACAAUCCAUGUCUUCCAAGAA--GCUC--CAA--GUCUUCC 3'


            | |||:|||||| ||||||| |||| ||| || ||| ||


target  3':AAGAGAGGGCCUGA-AGGUACAUAAGGACAAGCACGAAAUGUCGACAGUAGC 5'

 -37.70 1 RIC-seq
chrX:139865472:139865518:[+] chr12:124074930:124074984:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCGGACAAUCCAUGUCUUCCAAGA----------AGCUCCAAGUCUUCCA 3'


            | |||:|||||| ||||||| |||| |||| :|| |||


target  3':AAGAGAGGGCCUGA-AGGUACAUAAGGACAAGCACGAAAUGUCGACAG-UAGC-GGUG 5'

 -38.00 13 RIC-seq