Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866267:139866291:[+] chr5:61684482:61684504:[-] nonBSJ supported 3UTR

circRNA 5':CCAGA-CUAUCCAUGUCUUCCAGAAA 3'


            |||| ||| |:|| ||||


target  3':UGUCUCGAUUUC--CGGAUU-UCUUC 5'

 -10.00 34 RIC-seq
chrX:139866268:139866291:[+] chr5:61684485:61684504:[-] nonBSJ supported 3UTR

circRNA 5':CAGACUAUCCAUGUCUUCCAGAAA 3'


            || ||| |:|| ||||


target  3':CUC-GAUUUC--CGGAUU-UCUUC 5'

 -5.80 1 RIC-seq
chrX:139866532:139866543:[+] chr5:61684441:61684452:[-] nonBSJ supported 3UTR

circRNA 5': GUCUUCCAGAAA 3'


            | || |||


target  3':ACUGAUCA-CUUC 5'

 -1.30 2 RIC-seq
chrX:139866539:139866551:[+] chr5:61684411:61684422:[-] nonBSJ supported 3UTR

circRNA 5':AGAAAAUCCACGU 3'


            ||| ||||


target  3':ACUUAUU-GUGCU 5'

 -4.70 10 RIC-seq