Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865764:139865776:[+] chr1:51869166:51869179:[-] nonBSJ supported CDS

circRNA 5':UGUCUU-CCAGAAA 3'


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target  3':UCAGUGUGGUCUUC 5'

 -11.00 8 RIC-seq
chrX:139865803:139865815:[+] chr1:51869166:51869179:[-] nonBSJ supported CDS

circRNA 5':UGUCUU-CCAGAAA 3'


            ||| ||||||


target  3':UCAGUGUGGUCUUC 5'

 -11.00 5 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:51869166:51869179:[-] target - chr1:51869167-51869168 G>T LICA-CN ICGC