Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866188:139866231:[+] chr1:109525321:109525363:[-] nonBSJ supported CDS

circRNA 5':AUAGCUUC-CAAAAAAUCCGGGUCUUCCAGGAAAU-CCGUGUCUUC 3'


            |||||:| | || |||:|||||| |||| ||: ||||:


target  3': AUCGAGGAGGCGAA-AGACCCGGAAGGUA-UUUACGGUUCAGAGA 5'

 -37.80 1 RIC-seq
chrX:139866189:139866230:[+] chr1:109525322:109525363:[-] nonBSJ supported CDS

circRNA 5':UAGCUUC-CAAAAAAUCCGGGUCUUCCAGGAAAU-CCGUGUCUU 3'


            ||||:| | || |||:|||||| |||| ||: ||||:


target  3': UCGAGGAGGCGAA-AGACCCGGAAGGUA-UUUACGGUUCAGAGA 5'

 -36.00 1 RIC-seq
chrX:139866189:139866231:[+] chr1:109525322:109525363:[-] nonBSJ supported CDS

circRNA 5':UAGCUUC-CAAAAAAUCCGGGUCUUCCAGGAAAU-CCGUGUCUUC 3'


            ||||:| | || |||:|||||| |||| ||: ||||:


target  3': UCGAGGAGGCGAA-AGACCCGGAAGGUA-UUUACGGUUCAGAGA 5'

 -36.40 25 RIC-seq
chrX:139866189:139866233:[+] chr1:109525322:109525374:[-] nonBSJ supported CDS

circRNA 5':UAGCUUC-CAAAAAAUCCGGGUCUUCCAGGAAAU-CCGUGUCU--------UCCA 3'


            ||||:| | || |||:|||||| |||| ||: |||| ||||


target  3': UCGAGGAGGCGAA-AGACCCGGAAGGUA-UUUACGGUUCAGAGAUUAACAAGGUA 5'

 -36.80 1 RIC-seq