Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866096:139866137:[+] chr5:77772390:77772440:[+] nonBSJ supported Exon

circRNA 5':CAUGUCUUCCAGAAAAUC-------CACAUCUUCCAAU----GGCCUCCAGGU 3'


            |: ||| :|||||| |||||| :|||| :|| ||||:


target  3':AUGGAGACAA-UUUUUAGUGUGUGUGUGUAG-GGGUUUUUUCUCGACGGUCUG 5'

 -25.30 1 RIC-seq
chrX:139866097:139866137:[+] chr5:77772390:77772440:[+] nonBSJ supported Exon

circRNA 5': AUGUCUUCCAGAAAAUC-------CACAUCUUCCAAU----GGCCUCCAGGU 3'


            |: ||| :|||||| |||||| :|||| :|| ||||:


target  3':AUGGAGACAA-UUUUUAGUGUGUGUGUGUAG-GGGUUUUUUCUCGACGGUCUG 5'

 -25.20 34 RIC-seq
chrX:139866100:139866137:[+] chr5:77772390:77772439:[+] nonBSJ supported Exon

circRNA 5':UCUUCCA--GAAAAUC-------CACAUCUUCCAAU----GGCCUCCAGGU 3'


            |:|| :|||||| |||||| :|||| :|| ||||:


target  3':UGGAGACAAUUUUUAGUGUGUGUGUGUAG-GGGUUUUUUCUCGACGGUCUG 5'

 -24.40 2 RIC-seq
chrX:139866106:139866137:[+] chr5:77772390:77772431:[+] nonBSJ supported Exon

circRNA 5':AGAAAAUC-------CACAUCUUCCAAU----GGCCUCCAGGU 3'


            ||||||| |||||| :|||| :|| ||||:


target  3':AUUUUUAGUGUGUGUGUGUAG-GGGUUUUUUCUCGACGGUCUG 5'

 -23.00 1 RIC-seq