Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866485:139866528:[+] chrX:76761421:76761465:[-] nonBSJ supported 3UTR

circRNA 5':AACAAAGGUACGUCUUC-CAGAAAAUCCACGUCUUCCAACC-AAGC 3'


            |||||||:| |||||| ||| || || || ||||


target  3': UGUUUCCGUUCAGAAGUGUCGACAUACUAAAGUC-GUCGGUUUCGA 5'

 -30.00 2 RIC-seq
chrX:139866672:139866721:[+] chrX:76938772:76938834:[-] nonBSJ supported CDS

circRNA 5':CCACG------UCUUC------CAGCA-UCUCUGUGUCUUCCAGCAUCUUCAUG-UCUUCCAAC 3'


            |||| ||||| ||| :||||: |||||| || ||||


target  3':UGUGCACCCCUAGAAGCUUCUAGUCUAAGGAGAUUUUCAUUACUUU-GAAGUAAAAGUUGGUUU 5'

 -24.00 1 RIC-seq
chrX:139866681:139866721:[+] chrX:76938793:76938834:[-] nonBSJ supported CDS

circRNA 5':CCAGCA-UCUCUGUGUCUUCCAGCAUCUUCAUG-UCUUCCAAC 3'


            ||| :||||: |||||| || ||||


target  3':AGUCUAAGGAGAUUUUCAUUACUUU-GAAGUAAAAGUUGGUUU 5'

 -19.30 1 RIC-seq
chrX:139866689:139866711:[+] chrX:76937541:76937566:[-] nonBSJ supported CDS

circRNA 5': UCUG-UGUCUUC-CAGCAUCUUCAU 3'


            |||| || |||| |||||| |||


target  3':GGGACAACUGAAGAGUCGUAUUAGUC 5'

 -22.10 2 RIC-seq
chrX:139866692:139866711:[+] chrX:76937546:76937566:[-] nonBSJ supported CDS

circRNA 5':GUGUCUUC-CAGCAUCUUCAU 3'


            || |||| |||||| |||


target  3':AACUGAAGAGUCGUAUUAGUC 5'

 -18.00 2 RIC-seq
chrX:139866693:139866750:[+] chrX:76949366:76949407:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCAG---CAUCUUCAUGUCUUCCAACAACUACCCAGUCUUCCAUCAACUGGCUCA 3'


            |:|:| |||||| ||||||| |||: ||||||||


target  3':CCGGGAAAUUUUAGUAGAA--ACAGAAGUAA--------GUCG---------UGACCGAGA 5'

 -30.10 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:76938772:76938834:[-] target 1073930 chrX:76938788-76938789 G>A Alpha_thalassemia-X-linked_intellectual_disability_syndrome|ATR-X-related_syndrome ClinVar
chrX:76938772:76938834:[-] target 3768380 chrX:76938814-76938815 G>GA Alpha_thalassemia-X-linked_intellectual_disability_syndrome ClinVar
chrX:76938793:76938834:[-] target 3768380 chrX:76938814-76938815 G>GA Alpha_thalassemia-X-linked_intellectual_disability_syndrome ClinVar
chrX:76949366:76949407:[-] target 2506580 chrX:76949396-76949397 A>AGC Intellectual_disability-hypotonic_facies_syndrome,_X-linked,_1 ClinVar
chrX:76938772:76938834:[-] target - chrX:76938787-76938788 C>T LICA-CN ICGC