Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865936:139865956:[+] chr11:33743973:33743992:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCUGAAGA-UCCACGUC 3'


            ||:|||| || ||| |:|


target  3':UGGGAGGAAC-CUAAGG-GUAA 5'

 -13.70 2 RIC-seq
chrX:139865959:139865979:[+] chr11:33743969:33743989:[-] nonBSJ supported CDS

circRNA 5':CCAGAAAAUCCAUGUCUUCCA 3'


            |||| ||| || ||||


target  3':UGUCUGGGAGGAACCUAAGGG 5'

 -14.80 1 RIC-seq
chrX:139866014:139866036:[+] chr11:33743969:33743991:[-] nonBSJ supported CDS

circRNA 5':CCAGAAAAUCCACGUCUUCCCAA 3'


            |||| ||| ||||||


target  3':UGUCUGGGAGGAACCUAAGGGUA 5'

 -16.70 28 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr11:33743969:33743991:[-] target 3599568 chr11:33743990-33743991 A>G Primary_CD59_deficiency ClinVar
chr11:33743973:33743992:[-] target 3599568 chr11:33743990-33743991 A>G Primary_CD59_deficiency ClinVar