Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866551:139866585:[+] chr2:26415179:26415213:[-] nonBSJ supported CDS

circRNA 5':UCUUCCAGAAAAUAUAUGU--CUUCCAACUAAGCUAC 3'


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target  3':UGAA-GUCUGAAUCCUCCGUCGAAGUCUGAG-CGAUU 5'

 -14.30 3 RIC-seq
chrX:139866567:139866585:[+] chr2:26415197:26415213:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCAACUAAGCUAC 3'


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target  3':UC-GAAGUCUGAG-CGAUU 5'

 -9.90 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:26415179:26415213:[-] target 189089 chr2:26415179-26415180 ACTTCAGACTTAGGAGGCAG>A Mitochondrial_trifunctional_protein_deficiency|Long_chain_3-hydroxyacyl-CoA_dehydrogenase_deficiency ClinVar
chr2:26415179:26415213:[-] target 1069465 chr2:26415185-26415186 G>GACTT Mitochondrial_trifunctional_protein_deficiency|Long_chain_3-hydroxyacyl-CoA_dehydrogenase_deficiency ClinVar
chr2:26415179:26415213:[-] target 188712 chr2:26415211-26415212 TA>T Long_chain_3-hydroxyacyl-CoA_dehydrogenase_deficiency|not_provided|Mitochondrial_trifunctional_protein_deficiency ClinVar
chr2:26415197:26415213:[-] target 188712 chr2:26415211-26415212 TA>T Long_chain_3-hydroxyacyl-CoA_dehydrogenase_deficiency|not_provided|Mitochondrial_trifunctional_protein_deficiency ClinVar