Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866490:139866503:[+] chr4:69179092:69179106:[-] nonBSJ supported 3UTR

circRNA 5':AGGUA-CGUCUUCCA 3'


            || ||||||||


target  3':CCCUUAGCAGAAGGC 5'

 -15.10 15 RIC-seq
chrX:139865919:139865952:[+] chr4:69215618:69215644:[-] nonBSJ supported 5UTR

circRNA 5':UCUUC-CAGCCAAUAUAUGUCUUCCUGAAGA-UCCA 3'


            |||| | :| ||||||:| |||


target  3':GGAAGAGCUG---------AGAAGGGCGAAAAAGGG 5'

 -17.00 1 RIC-seq
chrX:139865923:139865945:[+] chr4:69215614:69215636:[-] nonBSJ supported 5UTR

circRNA 5':CCAGCCAAUAUAUGUCUUCCUGA 3'


            ||||| ||||||:|


target  3':AGUCGGAAGAGCUGAGAAGGGCG 5'

 -21.50 1 RIC-seq
chrX:139865923:139865952:[+] chr4:69215614:69215643:[-] nonBSJ supported 5UTR

circRNA 5':CCAGCCAAUAUAUGUCUUCCUGAAGA-UCCA 3'


            ||||| ||||||:| |||


target  3':AGUCGGAAGAGCUGAGAAGGGCGAAAAAGG 5'

 -24.70 5 RIC-seq
chrX:139865923:139865952:[+] chr4:69215614:69215644:[-] nonBSJ supported 5UTR

circRNA 5':CCAGCCAAUAUAUGUCUUCCUGAAGA-UCCA 3'


            ||||| ||||||:| |||


target  3':AGUCGGAAGAGCUGAGAAGGGCGAAAAAGGG 5'

 -24.40 16 RIC-seq