Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865614:139865644:[+] chr13:73401168:73401198:[+] nonBSJ supported CDS

circRNA 5':CCAUGUCUUCCAAUAAUUUCAAGGUCUUCCA 3'


            ||||| ||| ||| :|||| |||||


target  3':AGUACAAAAGAGGAUUCGAGUUAAUGAAGGA 5'

 -20.00 1 RIC-seq
chrX:139865614:139865649:[+] chr13:73401161:73401198:[+] nonBSJ supported CDS

circRNA 5':CCAUGUCUUCCAAUAAUUUCAAGGUCUUCCA--UCAAA 3'


            ||||| ||| ||| :|||| ||||| ||||


target  3':AGUACAAAAGAGGAUUCGAGUUAAUGAAGGACAAGUUC 5'

 -21.40 10 RIC-seq
chrX:139865614:139865649:[+] chr13:73401162:73401198:[+] nonBSJ supported CDS

circRNA 5':CCAUGUCUUCCAAUAAUUUCAAGGUCUUCCA--UCAAA 3'


            ||||| ||| ||| :|||| ||||| ||||


target  3':AGUACAAAAGAGGAUUCGAGUUAAUGAAGGACAAGUU 5'

 -21.20 1 RIC-seq
chrX:139865615:139865649:[+] chr13:73401162:73401198:[+] nonBSJ supported CDS

circRNA 5': CAUGUCUUCCAAUAAUUUCAAGGUCUUCCA--UCAAA 3'


            ||||| ||| ||| :|||| ||||| ||||


target  3':AGUACAAAAGAGGAUUCGAGUUAAUGAAGGACAAGUU 5'

 -20.80 1 RIC-seq