Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865362:139865406:[+] chr9:88968092:88968135:[-] nonBSJ supported 5UTR

circRNA 5': AAGGUCUUCCAACAACUCCG--GGUCUUCCAGCGACUUCAAGUCUUC 3'


            ||||| |||| |||||| |||||||| |||


target  3':AUUCCAAAACGACAUAGAGGGUACCAGAAA----CUGAAGUUAA-AAGA 5'

 -25.50 1 RIC-seq
chrX:139865362:139865407:[+] chr9:88968092:88968135:[-] nonBSJ supported 5UTR

circRNA 5': AAGGUCUUCCAACAACUCCG--GGUCUUCCAGCGACUUCAAGUCUUCC 3'


            ||||| |||| |||||| |||||||| |||


target  3':AUUCCAAAACGACAUAGAGGGUACCAGAAA----CUGAAGUUAA-AAGA 5'

 -26.30 16 RIC-seq
chrX:139865363:139865407:[+] chr9:88968093:88968135:[-] nonBSJ supported 5UTR

circRNA 5': AGGUCUUCCAACAACUCCG--GGUCUUCCAGCGACUUCAAGUCUUCC 3'


            |||| |||| |||||| |||||||| |||


target  3':UUCCAAAACGACAUAGAGGGUACCAGAAA----CUGAAGUUAA-AAGA 5'

 -24.80 2 RIC-seq
chrX:139865376:139865407:[+] chr9:88968107:88968135:[-] nonBSJ supported 5UTR

circRNA 5':ACUCCG--GGUCUUCCAGCGACUUCAAGUCUUCC 3'


            |||| |||||| |||||||| |||


target  3':AGAGGGUACCAGAAA----CUGAAGUUAA-AAGA 5'

 -22.70 1 RIC-seq