Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865479:139865483:[+] chr8:41787926:41787929:[-] nonBSJ supported 3UTR

circRNA 5':CCGGA 3'


            |||


target  3': GCCC 5'

 -3.40 1 RIC-seq
chrX:139865472:139865497:[+] chr8:41791494:41791510:[-] nonBSJ supported CDS

circRNA 5':AUGUCUUCCGGACAAUCCAUGUCUUC 3'


           || |||||| ||| ||||


target  3':UAGAGAAGG------AGG---AGAAA 5'

 -11.00 1 RIC-seq
chrX:139865472:139865518:[+] chr8:41791494:41791530:[-] nonBSJ supported CDS

circRNA 5':AUGUCUUCCGGACAAUCCAUGUCUUCCAAGAAGCUCCAAGUCUUCCA 3'


           || |||||| ||| |||| || || ||||||


target  3':UAGAGAAGG------AGG---AGAAAAUUAAGCUAA-UUGAGAAGGA 5'

 -19.70 29 RIC-seq
chrX:139866638:139866665:[+] chr8:41795047:41795068:[-] nonBSJ supported CDS

circRNA 5':AGGGCUUCCAGCAUCU-GCUCGUCUUCCA 3'


            | |||| || :||| ||:|||


target  3':ACGCGAA------AGCCUGAG-AGGAGGA 5'

 -17.60 7 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr8:41791494:41791510:[-] target 2441906 chr8:41791507-41791508 CTT>C Autosomal_dominant_intellectual_disability-craniofacial_anomalies-cardiac_defects_syndrome ClinVar
chr8:41791494:41791530:[-] target 2441906 chr8:41791507-41791508 CTT>C Autosomal_dominant_intellectual_disability-craniofacial_anomalies-cardiac_defects_syndrome ClinVar
chr8:41795047:41795068:[-] target 180230 chr8:41795056-41795057 G>A Autosomal_dominant_intellectual_disability-craniofacial_anomalies-cardiac_defects_syndrome|not_provided ClinVar