Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866008:139866031:[+] chr6:83847766:83847785:[+] nonBSJ supported CDS

circRNA 5':AGUCUUCCAGAAAAUCCACGUCUU 3'


            ||||:|| |||||: ||


target  3':ACAGAGGGAG----AGGUGUCGAU 5'

 -18.10 22 RIC-seq
chrX:139866285:139866320:[+] chr6:83847766:83847792:[+] nonBSJ supported CDS

circRNA 5':CCAGAAAAUCCUUGUCUUCCCUCAAAUCCAUAGCUU 3'


            |||||| |||| |||||| ||||:||||


target  3':AGUCUUU-----ACAG-AGGGAG---AGGUGUCGAU 5'

 -33.40 20 RIC-seq
chrX:139866286:139866320:[+] chr6:83847766:83847790:[+] nonBSJ supported CDS

circRNA 5':CAGAAAAUCCUUGUCUUCCCUCAAAUCCAUAGCUU 3'


            ||||| |||| |||||| ||||:||||


target  3': UCUUU-----ACAG-AGGGAG---AGGUGUCGAU 5'

 -29.60 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866285:139866320:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866286:139866320:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC