Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866098:139866141:[+] chr16:23641464:23641507:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCAGAAA---AUCCACAUCUUCCAAUGGCCUCCAGGUCUUC 3'


            |||:|||| ||||| || || ||| ||:||


target  3':UCAGGAGGUAAAGACAUAGGUACGCAAAU---CCUGA-GUCAAGGAGA 5'

 -25.40 1 RIC-seq
chrX:139866101:139866144:[+] chr16:23641433:23641485:[-] nonBSJ supported CDS

circRNA 5':CUUCC----AGAAAAUCCACAUCUUCCAAU-GG-CCUCCAGGUCU---UCCAG 3'


            |||| |||| ||:|| :| |||||| ||| ||||


target  3':AAAGGACCAUCUUGUUAUUCCAGGAGAAGAUUCAGGAGGUAAAGACAUAGGUA 5'

 -27.40 42 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr16:23641433:23641485:[-] target 1074762 chr16:23641434-23641435 T>A Familial_cancer_of_breast ClinVar
chr16:23641433:23641485:[-] target 2502659 chr16:23641437-23641438 C>A Familial_cancer_of_breast|not_provided ClinVar
chr16:23641433:23641485:[-] target 1398125 chr16:23641438-23641439 TG>T Familial_cancer_of_breast ClinVar
chr16:23641433:23641485:[-] target 182739 chr16:23641442-23641443 AG>A Familial_cancer_of_breast|Hereditary_cancer-predisposing_syndrome|not_provided ClinVar
chr16:23641433:23641485:[-] target 1458380 chr16:23641448-23641449 A>AT Familial_cancer_of_breast ClinVar
chr16:23641433:23641485:[-] target 1074896 chr16:23641453-23641454 GTC>G Familial_cancer_of_breast ClinVar
chr16:23641433:23641485:[-] target 965115 chr16:23641454-23641455 TC>T Familial_cancer_of_breast ClinVar
chr16:23641433:23641485:[-] target 918586 chr16:23641458-23641459 C>CA Hereditary_cancer-predisposing_syndrome|Familial_cancer_of_breast ClinVar
chr16:23641433:23641485:[-] target 956312 chr16:23641458-23641459 C>CT Familial_cancer_of_breast ClinVar
chr16:23641433:23641485:[-] target 951699 chr16:23641460-23641461 TC>T Familial_cancer_of_breast ClinVar
chr16:23641433:23641485:[-] target 1445586 chr16:23641461-23641462 C>A Familial_cancer_of_breast ClinVar
chr16:23641433:23641485:[-] target 3228001 chr16:23641461-23641462 CT>C Hereditary_cancer-predisposing_syndrome|Familial_cancer_of_breast ClinVar
chr16:23641433:23641485:[-] target 632932 chr16:23641463-23641464 A>C Malignant_tumor_of_breast|Hereditary_cancer-predisposing_syndrome|Familial_cancer_of_breast|Hereditary_breast_ovarian_cancer_syndrome ClinVar
chr16:23641433:23641485:[-] target 2673881 chr16:23641469-23641470 TC>T Familial_cancer_of_breast ClinVar
chr16:23641433:23641485:[-] target 482042 chr16:23641472-23641473 AT>A Hereditary_cancer-predisposing_syndrome ClinVar
chr16:23641433:23641485:[-] target 1448783 chr16:23641484-23641485 A>AGAAC Familial_cancer_of_breast|Hereditary_cancer-predisposing_syndrome ClinVar
chr16:23641433:23641485:[-] target 859869 chr16:23641484-23641485 AT>A Familial_cancer_of_breast ClinVar
chr16:23641464:23641507:[-] target 2673881 chr16:23641469-23641470 TC>T Familial_cancer_of_breast ClinVar
chr16:23641464:23641507:[-] target 482042 chr16:23641472-23641473 AT>A Hereditary_cancer-predisposing_syndrome ClinVar
chr16:23641464:23641507:[-] target 1448783 chr16:23641484-23641485 A>AGAAC Familial_cancer_of_breast|Hereditary_cancer-predisposing_syndrome ClinVar
chr16:23641464:23641507:[-] target 859869 chr16:23641484-23641485 AT>A Familial_cancer_of_breast ClinVar
chr16:23641464:23641507:[-] target 856667 chr16:23641486-23641487 G>GC Familial_cancer_of_breast|Hereditary_cancer-predisposing_syndrome|not_provided ClinVar
chr16:23641464:23641507:[-] target 530125 chr16:23641491-23641492 T>A Familial_cancer_of_breast|Hereditary_cancer-predisposing_syndrome ClinVar
chr16:23641464:23641507:[-] target 942578 chr16:23641493-23641494 G>GGACTCAGTTCCTC Hereditary_cancer-predisposing_syndrome|Familial_cancer_of_breast ClinVar
chr16:23641464:23641507:[-] target 1455018 chr16:23641497-23641498 TCA>T Hereditary_cancer-predisposing_syndrome|Familial_cancer_of_breast ClinVar
chr16:23641464:23641507:[-] target 2673865 chr16:23641499-23641500 AGTTCCTCT>CC Familial_cancer_of_breast ClinVar
chr16:23641464:23641507:[-] target 482004 chr16:23641502-23641503 TC>T Gastric_cancer|Familial_cancer_of_breast|Hereditary_cancer-predisposing_syndrome ClinVar
chr16:23641464:23641507:[-] target 830154 chr16:23641503-23641504 C>A Hereditary_cancer-predisposing_syndrome|Familial_cancer_of_breast ClinVar
chr16:23641464:23641507:[-] target 1783571 chr16:23641506-23641507 C>A Hereditary_cancer-predisposing_syndrome ClinVar