Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866325:139866362:[+] chr2:135713090:135713126:[+] nonBSJ supported 3UTR

circRNA 5':AAAAUC-CAGGUCUUCCAGGAAAUCCGUGUCUUCCAGCA 3'


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target  3':GUUUAGUGUCAUU-AGGUGUAUU-GGUAAUAAUUGUCGA 5'

 -22.40 2 RIC-seq
chrX:139866080:139866108:[+] chr2:135711496:135711517:[+] nonBSJ supported CDS

circRNA 5':CGUCUUCCAAAAAAGCCAUGUC--UUCCAGA 3'


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target  3':ACAGA---------CGGUACAUAAAAAGUCA 5'

 -14.30 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:135711496:135711517:[+] target - chr2:135711499-135711500 ->A PACA-CA ICGC