Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865336:139865373:[+] chr9:99284828:99284863:[-] nonBSJ supported CDS

circRNA 5':CCAGGGUUUCCGAUGG----CACC-UGUGUCAAGGUCUUCCAA 3'


            ||:||: |||| |||| ||||||| :||||


target  3':AGUUCCG--GGCUUCAGAUAGUGGAACACAGU-----GAGGUA 5'

 -31.30 2 RIC-seq
chrX:139865336:139865382:[+] chr9:99284828:99284872:[-] nonBSJ supported CDS

circRNA 5':CCAGGGUUUCCGAUGG----CACC-UGUGUCAAGGUCUUCCAACAACUCCGG 3'


            ||:||: |||| |||| ||||||| :|||| ||


target  3':AGUUCCG--GGCUUCAGAUAGUGGAACACAGU-----GAGGUAACUAAAGCA 5'

 -31.40 13 RIC-seq
chrX:139865355:139865387:[+] chr9:99284822:99284843:[-] nonBSJ supported CDS

circRNA 5':CUGUG--UCAAGGUCUUCCAACAACUCCG-GGUCUU 3'


            ||: ||||||: ||| :||||


target  3': ACGAAAAGUUCCG------------GGCUUCAGA 5'

 -15.90 8 RIC-seq
chrX:139865842:139865861:[+] chr9:99285909:99285929:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCAGAAAA--AUCUAC 3'


            |||| |||| |:|:||


target  3': CAGAC-GUCUAGGACUGGGUGC 5'

 -9.80 1 RIC-seq
chrX:139866480:139866504:[+] chr9:99284817:99284848:[-] nonBSJ supported CDS

circRNA 5': CUUCCAACA---AAGGUAC---GUCUUCCAG 3'


            |||| ||||: |||| ||


target  3':AGAAGACGAAAAGUUCCGGGCUUCAGAUAGUG 5'

 -11.20 1 RIC-seq
chrX:139866490:139866540:[+] chr9:99284810:99284863:[-] nonBSJ supported CDS

circRNA 5':AGGUACGUCUUCCAGAAAAUCCACGUCUUCCAACCAA-GCCA--UGUC-UUCCAG 3'


            || |||||| || |:|: :|| |||| :||||


target  3':ACCUAACAGAAGACGAAA-AGUUCCGGGCUUCAGAUAGUGGAACACAGUGAGGUA 5'

 -24.00 35 RIC-seq