Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865372:139865399:[+] chr20:35125427:35125453:[+] nonBSJ supported CDS

circRNA 5':AACAAC-UCC-----GGGUCUUCCAGCGACUUCA 3'


            ||| ||| ||| ||| |:||


target  3':CUGUCAAAGGAAAACCCC-------CGCCGGAGC 5'

 -12.00 1 RIC-seq
chrX:139865391:139865425:[+] chr20:35125427:35125458:[+] nonBSJ supported CDS

circRNA 5':GCGACUUCAAGUCUUCCAAUAAUCUCAAGGUCUUC 3'


            ||| ||| |||| ||:||:


target  3':AGCUACUG-UCA-AAGGAAAACCCCCG-CCGGAGC 5'

 -14.50 49 RIC-seq
chrX:139865391:139865425:[+] chr20:35125428:35125458:[+] nonBSJ supported CDS

circRNA 5':GCGACUUCAAGUCUUCCAAUAAUCUCAAGGUCUUC 3'


            ||| ||| |||| ||:||:


target  3':AGCUACUG-UCA-AAGGAAAACCCCCG-CCGGAG 5'

 -14.00 1 RIC-seq
chrX:139865392:139865425:[+] chr20:35125427:35125454:[+] nonBSJ supported CDS

circRNA 5':CGACUUCAAGUCUUCCAAUAAUCUCAAGGUCUUC 3'


            ||| ||| |||| ||:||:


target  3':ACUG----UCA-AAGGAAAACCCCCG-CCGGAGC 5'

 -13.80 2 RIC-seq
chrX:139865616:139865643:[+] chr20:35155220:35155255:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAAUAAUUUCAAGG--------UCUUCC 3'


            || |||| ||| |||||


target  3':GACCGAAGAAACCCUGGCCUCCCCCACCAAAGAAGA 5'

 -8.10 2 RIC-seq
chrX:139865616:139865662:[+] chr20:35155215:35155255:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAAUAAUUUCAAGG--------UCUUCCAUCAAAUACAGAUCUUCCA 3'


            || |||| ||| ||||| ||||||


target  3':GACCGAAGAAACCCUGGCCUCCCCCACCAAAGAAG-------------AGAAGG 5'

 -14.20 38 RIC-seq
chrX:139865635:139865661:[+] chr20:35155220:35155254:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAUCAAAUACAGA----------UCUUCC 3'


            || |||| | || |||||


target  3':ACC-GAAGAAACCCUG-GCCUCCCCCACCAAAGAAGA 5'

 -7.80 1 RIC-seq
chrX:139865655:139865662:[+] chr20:35155215:35155221:[+] nonBSJ supported CDS

circRNA 5':AUCUUCCA 3'


            ||||||


target  3':GAGAAGG 5'

 -9.00 1 RIC-seq