Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865988:139866035:[+]	chr14:102547882:102547923:[-]	nonBSJ supported	3UTR	circRNA 5':AUGUCUUCCAGUAAC-CUCCCAGUCUUCCAGAAAAUCCACGUCUUCCCA 3' \|:\|\| \|\|\|:\| \| \|\| \|\|\| \|\|\| \|\|\|\|\| :\|\|\|\|\|\|\| target 3':CAUAGU--GUCGUAGUGAA--UCAUCU-GUC-UUUAGAA-UAGAAGGGG 5'	-25.80	1	RIC-seq
chrX:139866675:139866719:[+]	chr14:102547874:102547922:[-]	nonBSJ supported	3UTR	circRNA 5':CGUCU------UC-CAGCAUCUCUGUGUCUUCCAGC-AUCUUCAUGUCUUCCA 3' \|:\|\| \|\| \|\|\|\|\|\|\| \|\| \|\| \|\|\| \|\|\|\| \|:\|\|\|\|\|\| target 3':ACGGAUUCCAUAGUGUCGUAGUGAAUCAUCU-GUCUUUAGA---AUAGAAGGG 5'	-31.60	1	RIC-seq
chrX:139865633:139865666:[+]	chr14:102549503:102549532:[-]	nonBSJ supported	CDS	circRNA 5':CAAGGUCUUCCA-UCAAAUACAGAUCUUCCAGCUA 3' \|\|:\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|:\| \|\|\|\|\| target 3':AUUUCAGAAGGGGAGUUUA-----AGGAAGUCGAC 5'	-27.50	2	RIC-seq
chrX:139865880:139865915:[+]	chr14:102549437:102549480:[-]	nonBSJ supported	CDS	circRNA 5':GUCUUCCAGUCAA---------UCCACAUCUUCCGGAAAAAAUCC 3' \|\|\|\|\|\| \|: \|\| \|\|\|\|:\|\| \|\|\|\| \|\|\| target 3':GAGAAGGACGAAGAAAAAGAGAAGAAGUAGGAGACCUUCA--AGGU 5'	-20.60	4	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139865880:139865915:[+]	circRNA	-	chrX:139865903-139865904	C>T	LINC-JP	ICGC