Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865362:139865409:[+] chr2:218668895:218668943:[-] nonBSJ supported 3UTR

circRNA 5':AAGGUCUUCCAACAACUCC----GGGUCUUCCAGCGACUUCAAGUCUUCCAA 3'


            |||| || :|| ||| ||| |||||


target  3':AUCCACCUGGACCAAUCAAAACCUCC-GAAACCCAAAAACG-UCA-AAGGUA 5'

 -12.70 10 RIC-seq
chrX:139865380:139865446:[+] chr2:218668888:218668943:[-] nonBSJ supported 3UTR

circRNA 5':CGGGUCUUCCAGCGACUUCA--AGUCUUCCAAUAAUCUCAAGGUCUUCCAGAUAAUCCUGAGCUUCCAG 3'


            |||| |||:| ||| ||| ||| || |||||


target  3':CCCCACAAUCCACCUGGACCAAUCAAAACC----------UCC-GAAACCCAAAAACG--UCAAAGGUA 5'

 -14.20 11 RIC-seq