Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865897:139865925:[+] chr2:216997645:216997673:[+] nonBSJ supported Intron

circRNA 5':CAUCUUCCGGAAAAAAUCCAG-GUCUUCCA 3'


            |||||||:| ||||| ||| :|| ||||


target  3':UUAGAAGGUCAAUUUUA-GUCAUAG-AGGUU 5'

 -23.50 1 RIC-seq
chrX:139865897:139865927:[+] chr2:216997643:216997673:[+] nonBSJ supported Intron

circRNA 5':CAUCUUCCGGAAAAAAUCCAG-GUCUUCCAGC 3'


            |||||||:| ||||| ||| :|| ||||:|


target  3':UUAGAAGGUCAAUUUUA-GUCAUAG-AGGUUGU 5'

 -26.90 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865897:139865925:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865897:139865927:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC