Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865785:139865815:[+] chr5:36678639:36678664:[+] nonBSJ supported Intron

circRNA 5':GGUCUUCCAGUCAAUCAGUGUCUUCCAGAAA 3'


            | |||| |||| ||| :||| ||||


target  3':AC-GAAGAA-AGUUU-UCA-GGAAAUUCUU 5'

 -11.10 2 RIC-seq
chrX:139866145:139866164:[+] chr5:36614953:36614972:[+] nonBSJ supported Intron

circRNA 5':ACUAUCCAUGUCUUCCAGAA 3'


            |||:|||: |||| |:|


target  3':AGAUGGGUGACGAAGUUUUG 5'

 -15.30 2 RIC-seq
chrX:139866324:139866352:[+] chr5:36666766:36666795:[+] nonBSJ supported Intron

circRNA 5':AAAAAU---CCAGGUCUUCCAGGAAAUCCGUG 3'


            ||||| |||:|| |:|||:| |||:|


target  3':AUUUUACACGGUUCA-AGGGUUCAA-AGGUAG 5'

 -20.70 1 RIC-seq
chrX:139866330:139866355:[+] chr5:36666784:36666815:[+] nonBSJ supported Intron

circRNA 5':CCAGGUCUUCCAGGAAAUCC------GUGUCU 3'


            ||:|| || |||| |||:|


target  3':AGUUCAUAAUUUCCUGUUGUAUUUUACACGGU 5'

 -12.30 1 RIC-seq