Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865335:139865385:[+] chr20:33588839:33588891:[+] nonBSJ supported CDS

circRNA 5':UCCAGGGUUUCCGAUGGCACC-UGUG-UCAAG-GUCUUC--CAACAACUCCGGGUC 3'


            || ||: :|| ||||| | || || || |||||| || | |||:|||


target  3':CGGACCUCGAGCG---CGUGGCAGACGAGGUCGCAGAAGAAGUAGGCAAGGUCCAC 5'

 -36.10 2 RIC-seq
chrX:139865338:139865381:[+] chr20:33588847:33588893:[+] nonBSJ supported CDS

circRNA 5':AGGGUUUCCGA---UG-GCACC-UGUG-UCAAG-GUCUUCCAACAACUCCG 3'


            |||::| || :| ||||| | || || || |||||| || ||||


target  3': CCCGGAC-CUCGAGCGCGUGGCAGACGAGGUCGCAGAAGAA-GU--AGGCA 5'

 -30.00 1 RIC-seq
chrX:139865338:139865385:[+] chr20:33588839:33588893:[+] nonBSJ supported CDS

circRNA 5':AGGGUUUCCGA---UG-GCACC-UGUG-UCAAG-GUCUUC--CAACAACUCCGGGUC 3'


            |||::| || :| ||||| | || || || |||||| || | |||:|||


target  3': CCCGGAC-CUCGAGCGCGUGGCAGACGAGGUCGCAGAAGAAGUAGGCAAGGUCCAC 5'

 -36.70 14 RIC-seq