Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866044:139866083:[+] chr20:32996511:32996548:[+] nonBSJ supported CDS

circRNA 5':AGUCUUCCG-GAUAAUUUGGGUCUUCCUGAAAA-UCUACGUC 3'


            |||||| ||: |:: :||| ||| |||||||


target  3':ACAGAAGAAACUGACAGG--UAGAU-GACACUGGAGAUGCA 5'

 -22.30 1 RIC-seq
chrX:139866044:139866088:[+] chr20:32996517:32996586:[+] nonBSJ supported CDS

circRNA 5':AGUCUUCC-----GGAUAAUUUG-G---------------GUCUUC-----CUGAAAAUCUACGUCUUCCA 3'


            | ||||| |||: |||| | |||||| ||| |||||| ||


target  3':AC-GAAGGUGAACCCUGACAAACACAACAACGUAAAAAGACAGAAGAAACUGACAGGUAGAUGACACUGGA 5'

 -26.10 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr20:32996517:32996586:[+] target 2840554 chr20:32996580-32996581 G>A Syndromic_multisystem_autoimmune_disease_due_to_ITCH_deficiency ClinVar