Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865648:139865658:[+] chr8:17885247:17885257:[+] nonBSJ supported 3UTR

circRNA 5':AAUACAGAUCU 3'


            |||||||||


target  3':AUAUGUCUAGU 5'

 -12.30 30 RIC-seq
chrX:139865439:139865486:[+] chr8:17796464:17796496:[+] nonBSJ supported CDS

circRNA 5':GCUUCCAGAAAAUCCACAUCUUC--CAGACAAUCCAUGUCUUCCGGACAA 3'


            ||:|| ||| ||||||| |||||| || ||||


target  3':AGAGGGG-----AGG-GUAGAAGAAGUCUGU-----------GGACUGUC 5'

 -28.40 19 RIC-seq
chrX:139865439:139865486:[+] chr8:17796465:17796496:[+] nonBSJ supported CDS

circRNA 5':GCUUCCAGAAAAUCCACAUCUUC--CAGACAAUCCAUGUCUUCCGGACAA 3'


            ||:|| ||| ||||||| |||||| || ||||


target  3':AGAGGGG-----AGG-GUAGAAGAAGUCUGU-----------GGACUGU 5'

 -28.20 1 RIC-seq
chrX:139865562:139865591:[+] chr8:17829850:17829872:[+] nonBSJ supported CDS

circRNA 5':GGUCUUCCACCAAAUCCAGAUCUUCCAGGA 3'


            |: ||||||| ||| |||| ||||


target  3':ACGAAAGGUGG---AGG---AGAA-GUCCG 5'

 -23.20 1 RIC-seq
chrX:139865562:139865607:[+] chr8:17829836:17829872:[+] nonBSJ supported CDS

circRNA 5':GGUCUUCCACCAAAUCCAGAUCUUCCAGGAAAAUCCACGUCUUCCA 3'


            |: ||||||| ||| |||| |||| ||||


target  3':ACGAAAGGUGG---AGG---AGAA-GUCCGUCAAAAAAU--AAGGA 5'

 -25.50 25 RIC-seq
chrX:139866410:139866431:[+] chr8:17869249:17869276:[+] nonBSJ supported CDS

circRNA 5': UCCA----GCCUACUUGUG--UCUUCCA 3'


            |||| |||| ||| ||||||


target  3':UAGGUGUCCCGGAAGAAGUUUAAGAAGG 5'

 -20.00 1 RIC-seq