Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865700:139865724:[+] chr18:44391743:44391766:[-] nonBSJ supported 3UTR

circRNA 5':CCAAAUCCAAGUCUUCCAGUAAAUC 3'


            ||||: ||| ||||||


target  3':CGUUUGUUG-CAGUUUCACAUUUAC 5'

 -8.70 1 RIC-seq
chrX:139865704:139865724:[+] chr18:44391725:44391749:[-] nonBSJ supported 3UTR

circRNA 5':AUC-CA-AGUCUUCC--AGUAAAUC 3'


            || || ||: :|| ||:|||:


target  3':AAGUGUGUCGUGAGUAAUCGUUUGU 5'

 -8.80 16 RIC-seq
chrX:139865708:139865725:[+] chr18:44391719:44391739:[-] nonBSJ supported 3UTR

circRNA 5':AAGU-CUUC---CAGUAAAUCU 3'


            || |||| |||:| ||


target  3':GUCUUGAAGUGUGUCGUG-AGU 5'

 -8.00 4 RIC-seq
chrX:139866621:139866649:[+] chr18:44470666:44470693:[-] nonBSJ supported CDS

circRNA 5':GGUCUUCCAGCAUCUCCAGGGCUUCCAGC 3'


            ||||| |||| | |||::|: |||


target  3':AUAGAACUUCGUCGU-GUCUUGGUUGUCC 5'

 -19.20 14 RIC-seq