Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865470:139865515:[+] chr2:210596714:210596752:[+] nonBSJ supported 3UTR

circRNA 5':CCAUGUCUUCCGGACAAUCCAUGUC-UUCCAAGAAGCUCCAAGUCUU 3'


            || |:| ||| || |||| ||||||


target  3':AGUCCGGUAA--CUGAUAA----AGUAAGGAAUAAACA--UUCAGAU 5'

 -11.80 2 RIC-seq
chrX:139865935:139865966:[+] chr2:210595491:210595510:[+] nonBSJ supported 3UTR

circRNA 5': UGUCUUCCUGAAGAUCCACGUCUUCCAGAAAA 3'


            |:||||| || ||||||


target  3':AAUAGAAG-------------AGUGAGUCUUUG 5'

 -10.40 1 RIC-seq
chrX:139865950:139865965:[+] chr2:210595486:210595502:[+] nonBSJ supported 3UTR

circRNA 5':CCACGUCUUC--CAGAAA 3'


            ||| || |||||


target  3':AGUG-AGUCUUUGUCUUA 5'

 -7.30 1 RIC-seq
chrX:139866327:139866337:[+] chr2:210595654:210595665:[+] nonBSJ supported 3UTR

circRNA 5':AAUCCAGGUCU 3'


            |||||||||:


target  3':AUAGGUCCAGGG 5'

 -17.30 2 RIC-seq
chrX:139866331:139866377:[+] chr2:210595621:210595662:[+] nonBSJ supported 3UTR

circRNA 5': CAGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAAUCCACGUCUUCCA 3'


            |||||| |||:: :|: ||| |||| ||||||


target  3':GGUCCAG--GGUUUACAAU-UAUUGAAUUAAC-UUAGAA--AGAAGGG 5'

 -21.50 1 RIC-seq
chrX:139866525:139866543:[+] chr2:210598433:210598452:[+] nonBSJ supported 3UTR

circRNA 5':AAGCCAUGUCU-UCCA-GAAA 3'


            || ||:||| || |||


target  3':AUC-GUGCAGUUAGAAACUUC 5'

 -9.00 2 RIC-seq
chrX:139866616:139866645:[+] chr2:210595638:210595664:[+] nonBSJ supported 3UTR

circRNA 5':CUCCAGGUCUUCCAGCAUCUCCAGGGCUUC 3'


            |||||||| |||: ::|||


target  3':UAGGUCCAG--GGUUUACAAUUA-UUGAAU 5'

 -18.90 2 RIC-seq
chrX:139866779:139866817:[+] chr2:210595777:210595830:[+] nonBSJ supported 3UTR

circRNA 5':UGCUGAUCUUCUGACAUUCA-----------GGUCU-UCC-AGUGUC--UGCAA 3'


            ||||||| ||||||||| :|||: ||| |:|| ||||


target  3':UCGACUAGUUGACUGUAAGAUUAGUCUGUGCUCAGGUAGGAUUACUUUCACGUA 5'

 -38.30 1 RIC-seq
chrX:139865488:139865512:[+] chr2:210557581:210557606:[+] nonBSJ supported CDS

circRNA 5':CCAUGUCUUCCAAGAA-GCUCCAAGU 3'


            ||||||||||| || ||||


target  3':AGUACAGAAGGUCCGACCGUUGUUCU 5'

 -23.30 4 RIC-seq
chrX:139865740:139865765:[+] chr2:210559728:210559769:[+] nonBSJ supported CDS

circRNA 5':AAUC--UAGA--UCUUC-CA--GUCAA---------UCAGUG 3'


            ||| ||| ||||| | ||||| |||||


target  3':AUAGUAAUCGAAAGAAGAGAACCAGUUUGAGGAAUGAGUCAG 5'

 -13.30 4 RIC-seq
chrX:139865836:139865905:[+] chr2:210559565:210559628:[+] nonBSJ supported CDS

circRNA 5':AGUCAGUGUCUUCCAGAAAAAUCUACGUCUUCC-ACCAAAUC--CAG-GUCUUCCAGUCAAU--CCACAUCUUCCG 3'


            ||| ||| |||:| ||||| || ||| ||| |:|||| |||| |||:||


target  3':CCAGACACC---GGUUUAG--------AGAAGCUUGAAAUAGUAGUCACGGAAGCAUUUUCCAUGGUG-AGAGGGG 5'

 -34.80 1 RIC-seq
chrX:139865970:139865981:[+] chr2:210557593:210557603:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAGA 3'


            ||||||||||


target  3': ACAGAAGGUCC 5'

 -16.80 2 RIC-seq
chrX:139866222:139866236:[+] chr2:210557591:210557606:[+] nonBSJ supported CDS

circRNA 5':CCGUGUCUUCCA-GCA 3'


            |:||||||||| ||


target  3':AGUACAGAAGGUCCGA 5'

 -20.90 1 RIC-seq
chrX:139866618:139866661:[+] chr2:210560668:210560713:[+] nonBSJ supported CDS

circRNA 5':CCAGGUCUUC-CAGCA-UCUCCAGGGCUUCC--AG-CAUCUGCUCGUCU 3'


            |||||||:| ||: :|||| ||| || || ||:|:: |||


target  3':CGUCCAGAGGUGUUUAAGGAGGGACCGU-GGACUCUGUGGGUC--CAGU 5'

 -38.30 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865836:139865905:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139866779:139866817:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC