Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865899:139865935:[+] chrX:110538782:110538801:[-] nonBSJ supported 3UTR

circRNA 5':UCUUCCGGAAAAAAUCCAGGUCUUCCAGCCAAUAUAU 3'


            |::||: ||||||||| |:|


target  3':UGGGGGU----------------AGGUCGGUUUUGU 5'

 -19.60 1 RIC-seq
chrX:139866579:139866610:[+] chrX:110538486:110538522:[-] nonBSJ supported 3UTR

circRNA 5':AAGCUAC-GUCU----UCCAACAAAUCCAUGUC-UUCC 3'


            | |||| :||| || ||||: |||


target  3':GUGGAUGUUAGACCGAAGAAAUCC-AGGUGAUUAAAGA 5'

 -11.10 2 RIC-seq
chrX:139865475:139865509:[+] chrX:110653266:110653296:[-] nonBSJ supported CDS

circRNA 5':UCUUCCGGACAAUCCAUGUCUUCCAAGAAGCUCCA 3'


            |:|||:| ||||||| ||||| || |||


target  3': GGAGGUCAAGUAGGUAC-GAAGG--CUAGAAGGA 5'

 -30.00 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:110653266:110653296:[-] target 434902 chrX:110653270-110653271 CAG>C Subcortical_laminar_heterotopia,_X-linked ClinVar
chrX:110653266:110653296:[-] target 210830 chrX:110653287-110653288 C>CG Abnormal_cortical_gyration ClinVar
chrX:110653266:110653296:[-] target 158454 chrX:110653290-110653291 T>A Ectopic_tissue ClinVar
chrX:110538486:110538522:[-] target - chrX:110538496-110538497 C>G PRAD-CA ICGC
chrX:139865899:139865935:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139866579:139866610:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866579:139866610:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC