Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865699:139865729:[+]	chr16:27472488:27472514:[-]	nonBSJ supported	3UTR	circRNA 5':ACCAAA-UCCAAGUCUUCCAGUAAAUCUAGUU 3' \|\| \|\|\| \|\| \|\|\|\|\|\|\|\| :\|\|\| target 3':GGGAGAAAGG-UCUCAAGGUCAU----GUCAC 5'	-17.70	1	RIC-seq
chrX:139865700:139865729:[+]	chr16:27472488:27472514:[-]	nonBSJ supported	3UTR	circRNA 5': CCAAA-UCCAAGUCUUCCAGUAAAUCUAGUU 3' \|\| \|\|\| \|\| \|\|\|\|\|\|\|\| :\|\|\| target 3':GGGAGAAAGG-UCUCAAGGUCAU----GUCAC 5'	-17.40	1	RIC-seq
chrX:139865867:139865908:[+]	chr16:27519891:27519938:[-]	nonBSJ supported	CDS	circRNA 5':CCACCAAAUCCAGGUCUUCCAGUCAAUCCACAU------CUUC-CGGAA 3' \|\|\| \|\| \| \| \|\|\|\| \|\|\| :\|\|\|\|\|\| \|: \| \|\|\|\| target 3':CGUGUCGUAAGAAC-GAAGAUCAAAAGGGUGUAAGUAUCGGUGAGCCUA 5'	-20.30	2	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139865867:139865908:[+]	circRNA	-	chrX:139865903-139865904	C>T	LINC-JP	ICGC