Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866057:139866079:[+] chr3:25670355:25670377:[-] nonBSJ supported CDS

circRNA 5':AUUUGGGUCUUCCUGAAAAUCUA 3'


            |:::|| ||| ||| ||||


target  3':AAGGUCC-GAAAGACCAAAAGAUA 5'

 -11.30 21 RIC-seq
chrX:139866383:139866402:[+] chr3:25668292:25668309:[-] nonBSJ supported CDS

circRNA 5':GCCAUGUCUUCCAUCAAAUU 3'


            || ||||||||| ||||


target  3':AGGC-CAGAAGGUAUUUUA 5'

 -15.30 3 RIC-seq
chrX:139866620:139866630:[+] chr3:25668294:25668304:[-] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAG 3'


            |||||||||


target  3':GCCAGAAGGUA 5'

 -16.30 2 RIC-seq