Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865613:139865660:[+] chr7:5567052:5567120:[-] nonBSJ supported 3UTR

circRNA 5':UCCAUGUCUUCCAAUA------------------------AUUUCAAGGU-CUUCCAUCAAAUACAGAUCUUC 3'


            |||| |||:| || || ||||| ||||| || ||||:


target  3': GGUA-AGAGGA--AUCUCUCUUCACCCCACCGAAAAUCCUACCGUUCCCUGAAGGACAUUGUUGCGUAGAGU 5'

 -18.50 28 RIC-seq
chrX:139865632:139865660:[+] chr7:5567091:5567120:[-] nonBSJ supported 3UTR

circRNA 5':UCAAGGU-CUUCCAUCAAAUACAGAUCUUC 3'


            ||||| ||||| || ||||:


target  3':CGUUCCCUGAAGGACAUUGUUGCGUAGAGU 5'

 -17.30 25 RIC-seq
chrX:139865632:139865660:[+] chr7:5567092:5567120:[-] nonBSJ supported 3UTR

circRNA 5':UCAAGGU-CUUCCAUCAAAUACAGAUCUUC 3'


            ||||| ||||| || ||||:


target  3': GUUCCCUGAAGGACAUUGUUGCGUAGAGU 5'

 -16.90 1 RIC-seq
chrX:139865635:139865660:[+] chr7:5567095:5567120:[-] nonBSJ supported 3UTR

circRNA 5':AGGUCUUCCAUCAAAUACAGAUCUUC 3'


            || ||||| || ||||:


target  3':CCCUGAAGGACAUUGUUGCGUAGAGU 5'

 -14.80 1 RIC-seq
chrX:139865376:139865392:[+] chr7:5568905:5568922:[-] nonBSJ supported CDS

circRNA 5':ACUCCGGGUC-UUCCAGC 3'


            ||||: ||| |:||||


target  3':AGAGGUACAGCAGGGUCA 5'

 -19.30 11 RIC-seq
chrX:139865984:139866000:[+] chr7:5568906:5568923:[-] nonBSJ supported CDS

circRNA 5':AUCCAUGUC-UUCCAGUA 3'


            |||||||| |:|||||


target  3':GAGGUACAGCAGGGUCAA 5'

 -23.10 23 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr7:5567052:5567120:[-] target - chr7:5567054-5567055 A>G LICA-CN ICGC
chr7:5567052:5567120:[-] target - chr7:5567112-5567113 C>T LAML-KR ICGC
chr7:5567091:5567120:[-] target - chr7:5567112-5567113 C>T LAML-KR ICGC
chr7:5567092:5567120:[-] target - chr7:5567112-5567113 C>T LAML-KR ICGC
chr7:5567095:5567120:[-] target - chr7:5567112-5567113 C>T LAML-KR ICGC