Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865596:139865645:[+] chr7:5567221:5567274:[-] nonBSJ supported 3UTR

circRNA 5':CCACGUCUUCCAGG----AAAUCCAU-GUCUU-CCAAUAAUUUCAAGGUCUUCCAU 3'


            ||| |||||| |||||| ||| |||| |||


target  3':AGUGGC-AAGGUCAAAAAUUUAGGACUCAGUUCGGUUUUUUUUUUUUUUUU-GGUU 5'

 -21.60 1 RIC-seq
chrX:139866040:139866072:[+] chr7:5567051:5567106:[-] nonBSJ supported 3UTR

circRNA 5':UCCAAGUCUUCC------------------------GGAUAAUUUGGGUCUUCCUGA 3'


            ||| |||:| |||| ||| |||||||


target  3':CGGUA-AGAGGAAUCUCUCUUCACCCCACCGAAAAUCCUACCGUUCCCUGAAGGACA 5'

 -24.30 1 RIC-seq
chrX:139866051:139866072:[+] chr7:5567085:5567106:[-] nonBSJ supported 3UTR

circRNA 5':CGGAUAAUUUGGGUCUUCCUGA 3'


            |||| ||| |||||||


target  3':UCCUACCGUUCCCUGAAGGACA 5'

 -22.70 1 RIC-seq
chrX:139866190:139866224:[+] chr7:5567712:5567759:[-] nonBSJ supported CDS

circRNA 5':AGCUUCCAAAAAAUC-------------CGGGUCUUCCAGGAAAUCCG 3'


            ||: ||| |:|||||| ||| |||


target  3':ACGGCGGUCUGUCGUGACACAACCGCAUGUCCAGAAACGCCUACAGGU 5'

 -22.90 1 RIC-seq
chrX:139866190:139866263:[+] chr7:5567712:5567773:[-] nonBSJ supported CDS

circRNA 5':AGCUUCCAAAAAAUC-------------CGGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAGUCCACGUCUUCCAACAAAGCCAUGU 3'


            ||: ||| |:|||||| ||| ||||||||| ||| ||||


target  3':ACGGCGGUCUGUCGUGACACAACCGCAUGUCCAGAAACGCCUA------------------CAGGUGCAG-----UGUGAA-GUAC 5'

 -33.50 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr7:5567712:5567759:[-] target 432794 chr7:5567727-5567728 CTG>C ACTB_Haploinsufficiency_syndrome|not_provided ClinVar
chr7:5567712:5567759:[-] target 521672 chr7:5567731-5567732 G>C Inborn_genetic_diseases ClinVar
chr7:5567712:5567759:[-] target 1174495 chr7:5567744-5567745 T>TC Baraitser-Winter_syndrome_1 ClinVar
chr7:5567712:5567773:[-] target 432794 chr7:5567727-5567728 CTG>C ACTB_Haploinsufficiency_syndrome|not_provided ClinVar
chr7:5567712:5567773:[-] target 521672 chr7:5567731-5567732 G>C Inborn_genetic_diseases ClinVar
chr7:5567712:5567773:[-] target 1174495 chr7:5567744-5567745 T>TC Baraitser-Winter_syndrome_1 ClinVar
chr7:5567051:5567106:[-] target - chr7:5567054-5567055 A>G LICA-CN ICGC