Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865813:139865846:[+] chr14:103851888:103851918:[+] nonBSJ supported 5UTR

circRNA 5':AAAGAAAUCCAGGUCUUC-CAGUCAGUCAGUGUCU 3'


            |||| ||||:| :| | | | || |:|:|


target  3':GUUCU----GUCCGGCGGCGCCCGACACCCGCGGC 5'

 -17.00 22 RIC-seq
chrX:139865876:139865906:[+] chr14:103851887:103851914:[+] nonBSJ supported 5UTR

circRNA 5':CCAGGUCUUCCAGUCAAUCCACAUCUUCCGG 3'


            ||||:| || |: |||


target  3':UGUCCGGC-GG-CGCCCGACACCCGC-GGCU 5'

 -12.90 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865876:139865906:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC